SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63725

Length: 422 nt

UniGene Fasta

>sp_v1.1_unigene63725
ATGGGGGACTTTGCACTAGGAGTGAAATCTAAGCATCCTGAGATAATGTTGGCCTACAATCTTTCACCTTCCTTCAACTGGGATGCCTCCAGAATGACTGATGAGCAGATGAAGAACTTCATTCCTGAGATTGCACGGTTAGGTTATTGCTGGCAATTCATCACACTGGCTGGATTCCATGCCAATGCACTGGTGATTGATACTTTCGCCAAGGACTTTGCACAGCGAGGGATGCTTGCATACGTGGAGAAAATCCAAAGGCAGGAAAGGATGAATGGAGTGGACACATTAGCTCACCAGAAATGGTCAGGTGCCAACTATTATGATCAGCTGCTGAAGACTGTTCAGGGTGTATCTCTGCTACTGCTGCTATGGCTAAAGGAGTGACAGAAGACCAGTTCAAGGAGACACAAAGCAGCACA

Ace file of the UniGene sp_v1.1_unigene63725

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Isocitrate lyase n=1 Tax=Pinus taeda RepID=ACEA_PINTA	-	-	98%
FL-Next	sp=Isocitrate lyase; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	isocitrate lyase	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	catalytic activity	GO:0003824	Molecular Function	92%

Source	InterPros	Term	Type	Identity
Blast2go	Isocitrate lyase/phosphorylmutase	IPR000918	-	92%
Blast2go	Isocitrate lyase	IPR006254	-	92%
Blast2go	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q43097

Fln msg: Overlapping hits, possible frame ERROR between 351 and 348, Distance to subject end: 18 aas, your sequence is shorter than subject: 141 - 580

Fln protein: MGDFALGVKSKHPEIMLAYNLSPSFNWDASRMTDEQMKNFIPEIARLGYCWQFITLAGFHANALVIDTFAKDFAQRGMLAYVEKIQRQERMNGVDTLAHQKWSGANYYDQLLKTVxxxISATAAMAKGVTEDQFKETQSST

Protein Length: 142

Fln nts: ATGGGGGACTTTGCACTAGGAGTGAAATCTAAGCATCCTGAGATAATGTTGGCCTACAATCTTTCACCTTCCTTCAACTGGGATGCCTCCAGAATGACTGATGAGCAGATGAAGAACTTCATTCCTGAGATTGCACGGTTAGGTTATTGCTGGCAATTCATCACACTGGCTGGATTCCATGCCAATGCACTGGTGATTGATACTTTCGCCAAGGACTTTGCACAGCGAGGGATGCTTGCATACGTGGAGAAAATCCAAAGGCAGGAAAGGATGAATGGAGTGGACACATTAGCTCACCAGAAATGGTCAGGTGCCAACTATTATGATCAGCTGCTGAAGACTGTTxxxxxxxxxATCTCTGCTACTGCTGCTATGGCTAAAGGAGTGACAGAAGACCAGTTCAAGGAGACACAAAGCAGCACA

Fln Alignment:

sp_v1.1_unigene63725___DFALGVKSKHPEIMLAYNLSPSFNWDASRMTDEQMKNFIPEIARLGYCWQFITLAGFHANALVIDTFAKDFAQRGMLAYVEKIQRQERMNGVDTLAHQKWSGANYYDQLLKTVQxCISATAAMAKGVTEDQFKETQSST
Q43097_______________DFALGVKSKHPEIMLAYNLSPSFNWDASRMTDEQMKNFIPEIARLGYCWQFITLAGFHADALVIDTFAKDFAQRGMLAYVEKIQRQEMMNGVDTLAHQKWSGANYYDQLLKTVQxGISATAAMAKGVTEDQFEETQSST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain