SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63718

Length: 318 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene63718
CTTGATGGCAGGTTTGTCAATTTCCATTGAATGCCTTTAACTCATTAGGACAATGAGTTGGATTTTTATGCATTTGCAGATATAGTACAATTAACTGGGGTATTTGTATTTGTATTTGGGCGTAACTCTATCAATGCAGTCTTCCAGGAGACTTCGGGTTCGATCCACTCGGACTAGGGTCAGACCCTGAGACCCTCAAATGGATGGTACAGTCTGAGCTAGTTCATTGCAGATGGGCAATGCTGGGGGCAGCTGGAATCTTCATTCCAGAGCTGTTCAAGTTACCCCAGACTCGACTATATTACATATATAGAAAAC

Ace file of the UniGene sp_v1.1_unigene63718

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LHC I type II chlorophyll binding protein (Fragment) n=1 Tax=Pinus sylvestris RepID=Q8RU80_PINSY	-	-	4.0e-20	97%
FL-Next	tr=Type II chlorophyll a /b-binding protein; Pinus sylvestris (Scots pine).	-	-	0.0	97%
Blast2go	light-harvesting complex i protein lhca2	-	-	7.37631e-20	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	7.37631e-20	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Chlorophyll A-B binding protein, plant	IPR001344	-	7.37631e-20	96%
Blast2go	Chlorophyll A-B binding protein	IPR022796	-	7.37631e-20	96%
Blast2go	Chlorophyll a/b binding protein domain	IPR023329	-	7.37631e-20	96%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q02070

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 130 aas, your sequence is shorter than subject: 105 - 278

Fln protein: *WQVCQFPLNAFNSLGQ*VGFLCICRYSTINWGICICIWA*LYQCSLPGDFGFDPLGLGSDPETLKWMVQSELVHCRWAMLGAAGIFIPELFKLPQTRLYYIYRK

Protein Length: 106

Fln nts: CTTGATGGCAGGTTTGTCAATTTCCATTGAATGCCTTTAACTCATTAGGACAATGAGTTGGATTTTTATGCATTTGCAGATATAGTACAATTAACTGGGGTATTTGTATTTGTATTTGGGCGTAACTCTATCAATGCAGTCTTCCAGGAGACTTCGGGTTCGATCCACTCGGACTAGGGTCAGACCCTGAGACCCTCAAATGGATGGTACAGTCTGAGCTAGTTCATTGCAGATGGGCAATGCTGGGGGCAGCTGGAATCTTCATTCCAGAGCTGTTCAAGTTACCCCAGACTCGACTATATTACATATATAGAAAAC

Fln Alignment:

sp_v1.1_unigene63718___SLPGDFGFDPLGLGSDPETLKWMVQSELVHCRWAMLGAAGIFIPEL
Q02070_______________SLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIPEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain