SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63700

Length: 332 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene63700
AGTTTTGTTTAACGTTGTGACCTTTGTATACCACAGGATGGATCTGCATCTCAATTTTGGGATTTCTGCAAGGAGCAAGGTCTTAGGAAACCCTGAAGACCTTGGCCAAAACCAACTCTCATAGCATGGAAACTAATTGCATCATATGCAGCTTTTGAAGCAGCACTCCAACTACTTTTACCTGGTGAAAGAGTAACTGGACCTGTTTCTCCTGCAGGAAACATTCCAGTCTATAAGGCAAACGGNGTGCTGGCTTACTTTGTCACATTGACAACTTATATTGCTATCTGGTGGTTTGGCCTATTTAATCCTGCAATTGTCTATGACCACTT

Ace file of the UniGene sp_v1.1_unigene63700

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	7-dehydrocholesterol reductase, putative n=1 Tax=Ricinus communis RepID=B9RHV1_RICCO	-	-	2.0e-36	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	sterol delta7 reductase	-	-	1.12104e-44	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	brassinosteroid biosynthetic process	GO:0016132	Biological Process	1.12104e-44	79%
Blast2go	sterol delta7 reductase activity	GO:0009918	Molecular Function	1.12104e-44	79%
Blast2go	integral to endoplasmic reticulum membrane	GO:0030176	Cellular Component	1.12104e-44	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLV4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 297 aas, your sequence is shorter than subject: 110 - 462

Fln protein: SFV*RCDLCIPQDGSASQFWDFCKEQGLRKP*RPWPKPTLIAWKLIASYAAFEAALQLLLPGERVTGPVSPAGNIPVYKANGVLAYFVTLTTYIAIWWFGLFNPAIVYDH

Protein Length: 111

Fln nts: AGTTTTGTTTAACGTTGTGACCTTTGTATACCACAGGATGGATCTGCATCTCAATTTTGGGATTTCTGCAAGGAGCAAGGTCTTAGGAAACCCTGAAGACCTTGGCCAAAACCAACTCTCATAGCATGGAAACTAATTGCATCATATGCAGCTTTTGAAGCAGCACTCCAACTACTTTTACCTGGTGAAAGAGTAACTGGACCTGTTTCTCCTGCAGGAAACATTCCAGTCTATAAGGCAAACGGaGTGCTGGCTTACTTTGTCACATTGACAACTTATATTGCTATCTGGTGGTTTGGCCTATTTAATCCTGCAATTGTCTATGACCACTT

Fln Alignment:

sp_v1.1_unigene63700___DGSASQFWDFCKEQGLRKP*RPWPKPTLIAWKLIASYAAFEAALQLLLPGERVTGPVSPAGNIPVYKANGVLAYFVTLTTYIAIWWFGLFNPAIVYDH
B8LLV4_______________DGSASQFWDFCKQQGLQGFLRICPKPTLIAWELIASYAAFEAALQLLLPGERVIGPVSPAGNIPVYKANGVAAYFITLTTYIAIWWFGLFNPAIVYDH

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
16	33	33		33	0.997749
26			33	66	0.997476
28		33		33	0.997753
107		66		33	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain