SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63637

Length: 425 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene63637
ATTAAAACGCTTGCCAGAGTCTGTTGCAATGTTGAAAGAGTTGACGATGCTGACGGTGGATAATGCAGGGATAGAGTATTTACCGGTAGGTATTGTGGAGTTAAACAATCTTGAAAGTTTGAGTGTAAAAACTTGTCCGCTACTCGAGGTGCCGTTTTTCAGTGTTGAAGATATTGAAGGAAGAAAAGAGGCATTAGAATCTTTGAGAAATGACAAGTCCATGCTTCGACTCAAGGATTTAGACCTGCAGGGGACGAGAATAAAGAAATTATCCTTTCCTCAAGGACTGTGCCCAAATCTTCACCATCTCAACATCAGCGGTGGTTTAGAATTGGTGGAGGTTGGAGCATTGCCCACAACACTGATTTCGCTGAACTTGAATGGTTGTACTGCATTAGAGAAAATAACAGGGCTTTGTGGTCTTG

Ace file of the UniGene sp_v1.1_unigene63637

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J6_PINTA	-	-	2.0e-28	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	tir nbs lrr disease resistance protein	-	-	5.06079e-37	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP91

Fln msg: Distance to subject end: 265 aas, your sequence is shorter than subject: 141 - 583

Fln protein: LKRLPESVAMLKELTMLTVDNAGIEYLPVGIVELNNLESLSVKTCPLLEVPFFSVEDIEGRKEALESLRNDKSMLRLKDLDLQGTRIKKLSFPQGLCPNLHHLNISGGLELVEVGALPTTLISLNLNGCTALEKITGLCGL

Protein Length: 142

Fln nts: ATTAAAACGCTTGCCAGAGTCTGTTGCAATGTTGAAAGAGTTGACGATGCTGACGGTGGATAATGCAGGGATAGAGTATTTACCGGTAGGTATTGTGGAGTTAAACAATCTTGAAAGTTTGAGTGTAAAAACTTGTCCGCTACTCGAGGTGCCGTTTTTCAGTGTTGAAGATATTGAAGGAAGAAAAGAGGCATTAGAATCTTTGAGAAATGACAAGTCCATGCTTCGACTCAAGGATTTAGACCTGCAGGGGACGAGAATAAAGAAATTATCCTTTCCTCAAGGACTGTGCCCAAATCTTCACCATCTCAACATCAGCGGTGGTTTAGAATTGGTGGAGGTTGGAGCATTGCCCACAACACTGATTTCGCTGAACTTGAATGGTTGTACTGCATTAGAGAAAATAACAGGGCTTTGTGGTCTTG

Fln Alignment:

sp_v1.1_unigene63637___KRLPESVAMLKELTMLTVDNAGIEYLPVGIVELNNLESLSVKTCPLLEVPFFSVEDIEGRKEALESL------RNDKSMLRLKDLDLQGTRIKKLSFPQGLCPNLHHLNISGGLELVEVGALPTTLISLNLNGCTALEKITGLCGL
B8LP91_______________KCLPDSVAELKQLTDLTIDCGRIEYLPAGVIEVKSLKILKVIRCPLRKVPFGRVENVEGKDASPDQSGGKLLNQSGRMLLRLKQLDLHGTRITELSFAEGICPNLRQLDISDCLELVEVGALPQTLISLDLNGCYALKRITGICGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain