SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63618

Length: 308 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene63618
CGTCGTGACCTTGGCTGTCACTCAAATTTTCAGGCCAAGGATCAGATTGGTAGCTTCTTTTACTTTCCTTCCCTTCACTTTCAGAGGGCAGCAGGAGGGTTTGGTGGAGTTATTGTGAACAATCGTCCAGTGATTCCTGTACCCTTTGGAACTCCCGATGGAGATTTCACAATCTTTATTGGTGACTGGTATACAAGGAGTCATACAGTGAGTGTTATTTCACCCCACACAAGTCAGGACTTTGGTTTTTGCATTGGACCATATTTGACTGAAATATATGGTTAATATGATGTAGATTGGTTAGTTCT

Ace file of the UniGene sp_v1.1_unigene63618

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SKU5; SKU5; copper ion binding / oxidoreductase	-	-	2.0e-16	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	pollen-specific protein	-	-	1.90145e-20	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell tip growth	GO:0009932	Biological Process	1.90145e-20	82%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	1.90145e-20	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.90145e-20	82%
Blast2go	apoplast	GO:0048046	Cellular Component	1.90145e-20	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cupredoxin	IPR008972	-	1.90145e-20	82%
Blast2go	Multicopper oxidase, type 3	IPR011707	-	1.90145e-20	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRE4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 384 aas, your sequence is shorter than subject: 95 - 591

Fln protein: RRDLGCHSNFQAKDQIGSFFYFPSLHFQRAAGGFGGVIVNNRPVIPVPFGTPDGDFTIFIGDWYTRSHTVSVISPHTSQDFGFCIGPYLTEIYG*

Protein Length: 96

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTTCAGGCCAAGGATCAGATTGGTAGCTTCTTTTACTTTCCTTCCCTTCACTTTCAGAGGGCAGCAGGAGGGTTTGGTGGAGTTATTGTGAACAATCGTCCAGTGATTCCTGTACCCTTTGGAACTCCCGATGGAGATTTCACAATCTTTATTGGTGACTGGTATACAAGGAGTCATACAGTGAGTGTTATTTCACCCCACACAAGTCAGGACTTTGGTTTTTGCATTGGACCATATTTGACTGAAATATATGGTTAATATGATGTAGATTGGTTAGTTCT

Fln Alignment:

sp_v1.1_unigene63618___NFQAKDQIGSFFYFPSLHFQRAAGGFGGXXXXXXXXXXXXFGTPDGDFTIFIGDWYTRSH
C0PRE4_______________NFQAKDQIGSFFYFPSLHFQRAAGGFGGVIVNNRAVIPVPFGTPDGDLTIFIGDWYTRSH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain