SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63586

Length: 285 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene63586
TTTGAGGACACGCAGAAAATGCTGAATACTTTGCAAAACACACTCAATCAGGAACCAGTGGACTACAAAAAGGTTGATTCGTGTCTGAACCACTTTAAGGGTAGCAGCTCAAGTATTGGGGCACAACGTGTGAAAAATGTATGCACAATATTTCGAGCGTGCTGTGAAGAAAAAATGAAAACTGGATGCTTCCAGTGTCTGCAAGAACTGAAGCAGGAGTATTATCTTCTCAAGGACAAGCTGGAAATTCTATTAAAGCTTGAACAACAGATCCGGCGAGCCGGT

Ace file of the UniGene sp_v1.1_unigene63586

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histidine containing phosphotransfer protein (Fragment) n=2 Tax=Selaginella moellendorffii RepID=D8R3I5_SELML	-	-	5.0e-17	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	histidine containing phosphotransfer protein	-	-	2.54731e-20	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	2.54731e-20	75%
Blast2go	cytokinin mediated signaling pathway	GO:0009736	Biological Process	2.54731e-20	75%
Blast2go	histidine phosphotransfer kinase activity	GO:0009927	Molecular Function	2.54731e-20	75%
Blast2go	protein binding	GO:0005515	Molecular Function	2.54731e-20	75%
Blast2go	cytoplasm	GO:0005737	Cellular Component	2.54731e-20	75%
Blast2go	nucleus	GO:0005634	Cellular Component	2.54731e-20	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Signal transduction histidine kinase, phosphotransfer (Hpt) domain	IPR008207	-	2.54731e-20	75%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPP0

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 95 - 151

Fln protein: FEDTQKMLNTLQNTLNQEPVDYKKVDSCLNHFKGSSSSIGAQRVKNVCTIFRACCEEKMKTGCFQCLQELKQEYYLLKDKLEILLKLEQQIRRAG

Protein Length: 96

Fln nts: TTTGAGGACACGCAGAAAATGCTGAATACTTTGCAAAACACACTCAATCAGGAACCAGTGGACTACAAAAAGGTTGATTCGTGTCTGAACCACTTTAAGGGTAGCAGCTCAAGTATTGGGGCACAACGTGTGAAAAATGTATGCACAATATTTCGAGCGTGCTGTGAAGAAAAAATGAAAACTGGATGCTTCCAGTGTCTGCAAGAACTGAAGCAGGAGTATTATCTTCTCAAGGACAAGCTGGAAATTCTATTAAAGCTTGAACAACAGATCCGGCGAGCCGGT

Fln Alignment:

sp_v1.1_unigene63586___FEDTQKMLNTLQNTLNQEPVDYKKVDSCLNHFKGSSSSIGAQRVKNVCTIFRACCEEKMKTGCFQCLQELKQ
A9NPP0_______________FEDSEKLLGDLSKTLNQEPVDFKRVDGCVHQFKGSSSSIGARRVMNTCVTFRAFCQDKNREGCLYCLQQMKQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain