SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63580

Length: 320 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene63580
TTTCCAATTTAAAATTGAGTATCAAAGGGTTGGTTACACAAGTCTCTCTCTGAGCAAGCAGATTCCTGTAAGGCCTTTCAGGCACAACGAATATGAAAGGTTCATTAAAGCTGCCTATCCATATTATGGAGGTGCATTTTCCATGGTATGCAATCACTTTTAAACTTCTCTGCAGTTATTTTTGTTTGTCTTTCAGGTCAAAGTCCATATGCTACTTTTGTTAATTTGGCTTTTTTCATGTGGACAATAGATTGTATTTATATTACTTACAGTTCATGGCATGATGGTTAAATGGTTGTTGTTCTCTAACTTTTTGCAGA

Ace file of the UniGene sp_v1.1_unigene63580

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RZC1_RICCO	-	-	3.0e-19	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	dolichyl-di-phosphooligosaccharide-protein glycotransferase -like	-	-	8.71337e-21	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein N-linked glycosylation via asparagine	GO:0018279	Biological Process	8.71337e-21	83%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	8.71337e-21	83%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	8.71337e-21	83%
Blast2go	plant-type cell wall organization	GO:0009664	Biological Process	8.71337e-21	83%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	8.71337e-21	83%
Blast2go	vacuole	GO:0005773	Cellular Component	8.71337e-21	83%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	8.71337e-21	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	8.71337e-21	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUT4

Fln msg: your sequence is shorter than subject: 54 - 437

Fln protein: FQFKIEYQRVGYTSLSLSKQIPVRPFRHNEYERFIKAAYPYYGGAFSMVCNHF*

Protein Length: 55

Fln nts: TTTCCAATTTAAAATTGAGTATCAAAGGGTTGGTTACACAAGTCTCTCTCTGAGCAAGCAGATTCCTGTAAGGCCTTTCAGGCACAACGAATATGAAAGGTTCATTAAAGCTGCCTATCCATATTATGGAGGTGCATTTTCCATGGTATGCAATCACTTTTAA___ACTTCTCTGCAGTTATTTTTGTTTGTCTTTCAGGTCAAAGTCCATATGCTACTTTTGTTAATTTGGCTTTTTTCATGTGGACAATAGATTGTATTTATATTACTTACAGTTCATGGCATGATGGTTAAATGGTTGTTGTTCTCTAACTTTTTGCAGA

Fln Alignment:

sp_v1.1_unigene63580___FQFKIEYQRVGYTSLSLSKQIPVRPFRHNEYERFIKAAYPYYGGAFSMVCNHF
A9NUT4_______________FQFKIEYQRVGYTSLSLSKQIPVRPFRHNEYERFIKAAYPYYGGTFSMMTGFF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain