SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63473

Length: 291 nt

UniGene Fasta

>sp_v1.1_unigene63473
ATGGTGCAGACAACAAGGGAGAAAGTCCTTCGTCAAGTCCCGACCATCCAGAAGATCCTTCGGCAGCTGAGTATGAAATTACAGAGGAGAGCAGAAAGGTTCGAGAGAGGCAAGAACAGGCTATTCAGGAGCTTCTGCTGCGGAGGCGTGCCTATGCATTGGCAGTCCCTACCAATGACTCTTCGGTGCGTGCTCGTCTTCGTCGCCTGAACGAACCTATTACCCTGTTCGGTGAGAGGGAGATGGAGAGACGTGACCGGCTCAGAGCGCTCATGGCGAAGCTTGATGCGG

Ace file of the UniGene sp_v1.1_unigene63473

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	U4/U6 small nuclear ribonucleoprotein Prp4, putative (EC:2.3.1.48); K12662 U4/U6 small nuclear ribonucleoprotein PRP4	-	-	4.0e-18	64%
FL-Next	sp=U4/U6 small nuclear ribonucleoprotein PRP4-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	69%
Blast2go	protein	-	-	3.30196e-20	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo sac egg cell differentiation	GO:0009560	Biological Process	3.30196e-20	87%
Blast2go	cell fate determination	GO:0001709	Biological Process	3.30196e-20	87%
Blast2go	nuclear speck	GO:0016607	Cellular Component	3.30196e-20	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Splicing factor motif	IPR003648	-	3.30196e-20	87%
Blast2go	Pre-mRNA processing factor 4 (PRP4)-like	IPR014906	-	3.30196e-20	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22212

Fln msg: Distance to subject end: 394 aas, your sequence is shorter than subject: 96 - 554

Fln protein: GADNKGESPSSSPDHPEDPSAAEYEITEESRKVRERQEQAIQELLLRRRAYALAVPTNDSSVRARLRRLNEPITLFGEREMERRDRLRALMAKLDA

Protein Length: 97

Fln nts: ATGGTGCAGACAACAAGGGAGAAAGTCCTTCGTCAAGTCCCGACCATCCAGAAGATCCTTCGGCAGCTGAGTATGAAATTACAGAGGAGAGCAGAAAGGTTCGAGAGAGGCAAGAACAGGCTATTCAGGAGCTTCTGCTGCGGAGGCGTGCCTATGCATTGGCAGTCCCTACCAATGACTCTTCGGTGCGTGCTCGTCTTCGTCGCCTGAACGAACCTATTACCCTGTTCGGTGAGAGGGAGATGGAGAGACGTGACCGGCTCAGAGCGCTCATGGCGAAGCTTGATGCGG

Fln Alignment:

sp_v1.1_unigene63473___EITEESRKVRERQEQAIQEXXXXXXXXXXXVPTNDSSVRARLRRLNEPITLFGEREMERRDRLRALMAKLD
O22212_______________EISEESKQVRERQEKALQDLLVKRRAAAMAVPTNDKAVRDRLRRLGEPITLFGEQEMERRARLTQLLTRYD

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
49		66	33		0.997464
50	66			33	0.997464
51		33	66		0.997464
52	66		33		0.997464
53	66			33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain