SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63460

Length: 482 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene63460
TTAGATATTCGGATTTCAGCAAAAATGGCTCTGAGCAGCGCTGCGGCTGATACGGATGGATCGGTTCATTCAACTTTTGCTTCAAGATATGTTCAGGAATCCTTGCCTCGGTACGTTTTCCTTCCTTCCTTCACCCCCATTCTACTGCTTTGCTTTTTCCAAGGATCGTTTTAATTCCACTAGCAAATAATGGGTGCATTCAGGATCTTTGCCATCTGTCTAGTCTGGTTTGAATGTGTGTGTTTTCAGGTTTCGAATGCCGGATAGGTCGATTCCCAAAGATGCCGCTTATCAAATCATCAGTGACGAGCTGATGCTGGATGGGAACCCCAGGCTCAATCTTGCCTCTTTCGTGACTACATGGATGGAACCTGAATGTGATAAGCTCATCATGCAGGCCATCAACAAGAACTATGTTGACATGGACGAGTATCCTGTCACCACAGAATTGCAGAATCGATGCGTGAACATATAGCCAATCT

Ace file of the UniGene sp_v1.1_unigene63460 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GAD; GAD; calmodulin binding / glutamate decarboxylase; K01580 glutamate decarboxylase [EC:4.1.1.15]	-	-	5.0e-34	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	glutamate decarboxylase	-	-	5.71761e-40	96%

Source	ECs	Term	Type	e value	Identity
AutoFact	Glutamate decarboxylase.	EC:4.1.1.15	-	5.0e-34	89%

Source	KEGGs	Term	e value	Identity
AutoFact	Alanine, aspartate and glutamate metabolism	00250	5.0e-34	89%
AutoFact	beta-Alanine metabolism	00410	5.0e-34	89%
AutoFact	Butanoate metabolism	00650	5.0e-34	89%
AutoFact	Metabolic pathways	01100	5.0e-34	89%
AutoFact	Biosynthesis of secondary metabolites	01110	5.0e-34	89%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTD1

Fln msg: Separated hits, possible frame ERROR between 114 and 248, Unexpected STOP codon at 3' end. Distance to subject end: 404 aas, your sequence is shorter than subject: 151 - 509

Fln protein: MALSSAAADTDGSVHSTFASRYVQESLPRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRFRMPDRSIPKDAAYQIISDELMLDGNPRLNLASFVTTWMEPECDKLIMQAINKNYVDMDEYPVTTELQNRCVNI*

Protein Length: 152

Fln nts: TTAGATATTCGGATTTCAGCAAAA_-_ATGGCTCTGAGCAGCGCTGCGGCTGATACGGATGGATCGGTTCATTCAACTTTTGCTTCAAGATATGTTCAGGAATCCTTGCCTCGGTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAGGTTTCGAATGCCGGATAGGTCGATTCCCAAAGATGCCGCTTATCAAATCATCAGTGACGAGCTGATGCTGGATGGGAACCCCAGGCTCAATCTTGCCTCTTTCGTGACTACATGGATGGAACCTGAATGTGATAAGCTCATCATGCAGGCCATCAACAAGAACTATGTTGACATGGACGAGTATCCTGTCACCACAGAATTGCAGAATCGATGCGTGAACATATAGCCAATCT

Fln Alignment:

sp_v1.1_unigene63460___SAAADTDGSVHSTFASRYVQESLPRYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRFRMPDRSIPKDAAYQIISDELMLDGNPRLNLASFVTTWMEPECDKLIMQAINKNYVDMDEYPVTTELQNRCVNI
C0PTD1_______________SRATDSDGSIHSTFASRYVQESLPRFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRFQMPERSIPKDAAYQIISDELMLDGNPRLNLASFVTTWMEPECDKLIMQAINKNYVDMDEYPVTTELQNRCVNI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain