SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63454

Length: 388 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene63454
CGATCGCAGGGTGGAAGAATGGGATCTTCCCCGTCTGCCATACTTAAAAGCAGTGGTGAAGGAGACGCTGAGGCTTCATCCACCGGGGCCATTGCTTATCCCACATGAGTCCTTCAGCGATTGCACCGTCGGCGGCTATTTTATACCCAGAAAATCTCGTCTTATAGTGAACGTGTGGGCCCTCGCAAGGGACCCCAAATCATGGGAAGATGCTGACGTGTTCAAGCCGGAGAGATTTGTTGGCAGCCCCATTGACATCAAGGGGCAACATTTCCAGATGCTTCCTTTGGGTCAGGCAGGAGAGGCTGCCCCGGGCAACCCCTGGCGCTAACCGTTGTGGAATATACCTTGGCCAGTCTTTTGCTATTGTTTGATTGGAAGCTGCCCG

Ace file of the UniGene sp_v1.1_unigene63454

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CYP736A3v2; cytochrome P450	-	-	3.0e-33	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	cytochrome p450	-	-	4.36178e-33	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	4.36178e-33	71%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	4.36178e-33	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQT4

Fln msg: Overlapping hits, possible frame ERROR between 316 and 259, Distance to subject end: 46 aas, your sequence is shorter than subject: 129 - 528

Fln protein: DRRVEEWDLPRLPYLKAVVKETLRLHPPGPLLIPHESFSDCTVGGYFIPRKSRLIVNVWALARDPKSWEDADVFKPERFVGSPIDxxxxxxxxxxxxxxxxxxxxxPLALTVVEYTLASLLLLFDWKLP

Protein Length: 130

Fln nts: CGATCGCAGGGTGGAAGAATGGGATCTTCCCCGTCTGCCATACTTAAAAGCAGTGGTGAAGGAGACGCTGAGGCTTCATCCACCGGGGCCATTGCTTATCCCACATGAGTCCTTCAGCGATTGCACCGTCGGCGGCTATTTTATACCCAGAAAATCTCGTCTTATAGTGAACGTGTGGGCCCTCGCAAGGGACCCCAAATCATGGGAAGATGCTGACGTGTTCAAGCCGGAGAGATTTGTTGGCAGCCCCATTGACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCCCTGGCGCTAACCGTTGTGGAATATACCTTGGCCAGTCTTTTGCTATTGTTTGATTGGAAGCTGCCCG

Fln Alignment:

sp_v1.1_unigene63454___DRRVEEWDLPRLPYLKAVVKETLRLHPPGPLLIPHESFSDCTVGGYFIPRKSRLIVNVWALARDPKSWEDADVFKPERFVGSP---IDIxxxxxxxxxxxxxxxxxxxQPLALTVVEYTLASLLLLFDWKLP
C0PQT4_______________NRKVRESDLPHLPYLQAVVKETLRLYPSAPLLAPHESMESCTVCDYEIPARTRVIVNAWAIGRDPKSWEDAEEFKPERFTESPSSCVDVxxxxxxxxxxxxxxxxxxxMQLGMVIVEFVLAQLLHCLDWRLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain