SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63437

Length: 564 nt

UniGene Fasta

>sp_v1.1_unigene63437
CGTCGTGACCTTGGCTGTCACTCAGGATTGATTCCTTGTTTCTATTTTACTGCAAAAGATGGTACCCAAGGTTGGATGTTGTTCCTATGTATTGTGCTCGGTATTTCCAATGGATACCTTACAGTTTGTATATTCACTGCTGCACCGAAAGGATATAAGGGACCTGAACAGAACGCACTGGGAAATCTATTAGTACTATTTTTGATATTAGGACTATTTGGAGGATCTGCTGCTGGTTGGCTATGGCTAATTGGTAAAGGCTGGTAAATCCTGTTGTCATTAAACTTCAAGTTCTTGAGTTGAAAGTATTAGTCTCGGCCTGAAGATCAAGGCATAGCCAGTCAAATTTCATTCAAAAATATTCCTCGACCGAAAGAGTTCCAATAAGGTCAGGGTGAACTTAATGTTTAGATTATTAGAAATTTGTTCTATATTTGAACTGGGGATGGCTCTTTCTCATTCTCTTATATATATAGGCATTTATAGTTGCGTTACCTCATCTGCACCTATATATTCTTTCCTGAAGTGGGAAGAGACAAATCTCTCAACAAATCTCTCCACTTC

Ace file of the UniGene sp_v1.1_unigene63437

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	equilibrative nucleoside transporter	-	-	3.0e-15	72%
FL-Next	tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	72%
Blast2go	equilibrative nucleoside transporter	-	-	5.31609e-16	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	pyrimidine nucleoside transport	GO:0015864	Biological Process	5.31609e-16	82%
Blast2go	nucleoside transmembrane transporter activity	GO:0005337	Molecular Function	5.31609e-16	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.31609e-16	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Equilibrative nucleoside transporter	IPR002259	-	5.31609e-16	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: C6TLM2

Fln msg: your sequence is shorter than subject: 89 - 115

Fln protein: RRDLGCHSGLIPCFYFTAKDGTQGWMLFLCIVLGISNGYLTVCIFTAAPKGYKGPEQNALGNLLVLFLILGLFGGSAAGWLWLIGKGW*

Protein Length: 90

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGATTGATTCCTTGTTTCTATTTTACTGCAAAAGATGGTACCCAAGGTTGGATGTTGTTCCTATGTATTGTGCTCGGTATTTCCAATGGATACCTTACAGTTTGTATATTCACTGCTGCACCGAAAGGATATAAGGGACCTGAACAGAACGCACTGGGAAATCTATTAGTACTATTTTTGATATTAGGACTATTTGGAGGATCTGCTGCTGGTTGGCTATGGCTAATTGGTAAAGGCTGGTAA___ATCCTGTTGTCATTAAACTTCAAGTTCTTGAGTTGAAAGTATTAGTCTCGGCCTGAAGATCAAGGCATAGCCAGTCAAATTTCATTCAAAAATATTCCTCGACCGAAAGAGTTCCAATAAGGTCAGGGTGAACTTAATGTTTAGATTATTAGAAATTTGTTCTATATTTGAACTGGGGATGGCTCTTTCTCATTCTCTTATATATATAGGCATTTATAGTTGCGTTACCTCATCTGCACCTATATATTCTTTCCTGAAGTGGGAAGAGACAAATCTCTCAACAAATCTCTCCACTTC

Fln Alignment:

sp_v1.1_unigene63437___LIPCFYFTAKDGTQGWMLFLCIVLGISNGYLTVCIFTAAPKGYKGPEQNA
C6TLM2_______________LIPAFYFTAKYGDQGWMILLTSFLGLTNGYLTVCVLTVAPRGYKGPEQNA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain