SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63362

Length: 531 nt

UniGene Fasta

>sp_v1.1_unigene63362
CGACGCCGTGGACCACCTGAATTTCACCTTCGATGGCCGGGCCTTTGCAATCCCAGAGACCCACGAGGCCCTCTGGGCTTCCCCGGATGGGGCTGTCACGATCGAAAGGACTGCTCGGAGAAATAGCGCCATGGTCAGGCTGAAGGGCACCGCCGAGATATCGGTGCGGGTGGTGCCCATCACGCCGCAGGAGGACCGGGTCCACAATTACCAGTTGCCACCCGACGACTGCTTCGCCCATCTTGATTTGCGATTCGACTTTTTGGATCTCTCGGACATTGTTGATGGCGTCCTTGGGCAGACCTACAGGCCGAATTTTGTTAATCCTGTTAAGAGGGGAGTCCCCATGCCCGTAATGGGAGGAGAAGACAGGTACAGGACTTCGTCTTTGCTCTCCACAGATTGCCGATCCTGCACTGCCTTTGGCTCCTACAGAATCAGTAATAATAAGAATCGAGGTGCTGCCCTGAAAATGCCTGCTTCTACATGCAGTGGAAACTTCGAAAGTCAAGGAGGCATAGTCTGCAGGAA

Ace file of the UniGene sp_v1.1_unigene63362

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	late embryogenesis abundant protein-related / LEA protein-related [Arabidopsis thaliana] dbj\|BAB10109.1\| root cap protein 2-like protein [Arabidopsis thaliana] gb\|AAZ23915.1\| At5g54370 [Arabidopsis thaliana]	-	-	9.0e-38	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	late embryogenesis abundant lea	-	-	2.37954e-41	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Root cap	IPR009646	-	2.37954e-41	66%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAU8

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 176 - 342

Fln protein: DAVDHLNFTFDGRAFAIPETHEALWASPDGAVTIERTARRNSAMVRLKGTAEISVRVVPITPQEDRVHNYQLPPDDCFAHLDLRFDFLDLSDIVDGVLGQTYRPNFVNPVKRGVPMPVMGGEDRYRTSSLLSTDCRSCTAFGSYRISNNKNRGAALKMPASTCSGNFESQGGIVCR

Protein Length: 177

Fln nts: CGACGCCGTGGACCACCTGAATTTCACCTTCGATGGCCGGGCCTTTGCAATCCCAGAGACCCACGAGGCCCTCTGGGCTTCCCCGGATGGGGCTGTCACGATCGAAAGGACTGCTCGGAGAAATAGCGCCATGGTCAGGCTGAAGGGCACCGCCGAGATATCGGTGCGGGTGGTGCCCATCACGCCGCAGGAGGACCGGGTCCACAATTACCAGTTGCCACCCGACGACTGCTTCGCCCATCTTGATTTGCGATTCGACTTTTTGGATCTCTCGGACATTGTTGATGGCGTCCTTGGGCAGACCTACAGGCCGAATTTTGTTAATCCTGTTAAGAGGGGAGTCCCCATGCCCGTAATGGGAGGAGAAGACAGGTACAGGACTTCGTCTTTGCTCTCCACAGATTGCCGATCCTGCACTGCCTTTGGCTCCTACAGAATCAGTAATAATAAGAATCGAGGTGCTGCCCTGAAAATGCCTGCTTCTACATGCAGTGGAAACTTCGAAAGTCAAGGAGGCATAGTCTGCAGGAA

Fln Alignment:

sp_v1.1_unigene63362___AVDHLNFTFDGRAFAIPETHEALWASPDGAVTIERTARRNSAMVRLKGTAEISVRVVPITPQEDRVHNYQLPPDDCFAHXXXXXXXXXXXXIVDGVLGQTYRPNFVNPVKRGVPMPVMGGEDRYRTSSLLSTDCRSCTAFGSYRISNNKNRGAA-----LKMPASTCSGNFESQGGIVCR
D5AAU8_______________SVDQFVLYFDGYSISLPPGEGSKWVSPNRELSIVRVENANYLNVEITGLLNSSIGIVPVTKEDSRVHKYEITDADCFAHLELNFDFFKLTDSVSGVLGQSYAPSFVNPVKKGVPMPLMGGEKNFMASSIFTPDCEA-VQFKAMHHSSIVGSGLGRNPHRLGMPSAVCSSNGSEGSGFVCK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain