SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63248

Length: 249 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene63248
AAGAAATCAAAGAATACAAGGCGATATTAAAATGCAGTGTCTGTCACGATCGGCCCAAGGAAGTAGGTTGTCGTTACCTTGGTTGTCACTTGTTTTGTGGCCCTTGTATTCAACGCAACTTGGAGATTCGTCACCGCAAATGTCCAGGGTGCGGTACAGCTTTCGGACAAAATGATGTACGGACAGTATACATATGAATATCATCGGGCATGGTGAAGAGGAAGTTGATGATGGTGGGCCTGCATCCAA

Ace file of the UniGene sp_v1.1_unigene63248

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-protein ligase bre-1, putative; K10696 E3 ubiquitin-protein ligase BRE1 [EC:6.3.2.19]	-	-	5.0e-21	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	protein	-	-	2.91488e-21	77%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	5.0e-21	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	histone H2B ubiquitination	GO:0033523	Biological Process	2.91488e-21	77%
Blast2go	histone monoubiquitination	GO:0010390	Biological Process	2.91488e-21	77%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	2.91488e-21	77%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	2.91488e-21	77%
Blast2go	seed dormancy process	GO:0010162	Biological Process	2.91488e-21	77%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	2.91488e-21	77%
Blast2go	nucleus	GO:0005634	Cellular Component	2.91488e-21	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABH9

Fln msg: your sequence is shorter than subject: 65 - 205

Fln protein: EIKEYKAILKCSVCHDRPKEVGCRYLGCHLFCGPCIQRNLEIRHRKCPGCGTAFGQNDVRTVYI*

Protein Length: 66

Fln nts: AAGAAATCAAAGAATACAAGGCGATATTAAAATGCAGTGTCTGTCACGATCGGCCCAAGGAAGTAGGTTGTCGTTACCTTGGTTGTCACTTGTTTTGTGGCCCTTGTATTCAACGCAACTTGGAGATTCGTCACCGCAAATGTCCAGGGTGCGGTACAGCTTTCGGACAAAATGATGTACGGACAGTATACATATGA___ATATCATCGGGCATGGTGAAGAGGAAGTTGATGATGGTGGGCCTGCATCCAA

Fln Alignment:

sp_v1.1_unigene63248___IKEYKAILKCSVCHDRPKEVGCRYLGCHLFCGPCIQRNLEIRHRKCPGCGTAFGQNDVRTVYI
D5ABH9_______________VKEIK--LSCAICMDKMKEETTTICG-HVFCKKCIVRAIEV-YKQCPSCRKKLTMKSIHRIYI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain