SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63245

Length: 536 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene63245
ATGGGTCATGCATGTGATACAGAGGTTGCATACATTGACATTAAGAAAGAGAGCCCAGTTGGTCATGGGAAGATCACTTGTTTCAGTATATATTGTGGATCTCAAGCTGATTTTGGCAATGGCAAGTCCTGTGTATCGGTAGACGTGCTGGGCGGTGGTAAAGATGTCTTGTCAGAATTTTCTTGTTATTTTGGAGATACATCTATTCAAAAGGTTTGGCATAATTATAGTTTTGACAAGCATATCATAGAAAATCATGGGATTGATGTCAAGGGGTTCCATGCTGATACGATGCATCTTGCACGACTATGGAATTCTGCAAGGAGTCGAGAAGGTGGATATTCACTTGAATCTCTTACAAAGGATCCAAAGGTCATGGATGGAGGTGGTGCAGAAACTGAAGATGAGCTGATTATGGGCAAGGAGTCTATGAAATCGATATTTGGGAAAAAAAAGATAAAGAAGGATGGCACAGAGGGGAAAGTTGTGACCCTTCCACCTGTTGAAGAGCTCCAAAGAACTGAACGCATACCATG

Ace file of the UniGene sp_v1.1_unigene63245 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase A family protein, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C6J5_ARATH	-	-	59%
FL-Next	tr=At1g50840/F8A12_8; Arabidopsis thaliana (Mouse-ear cress).	-	-	66%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	3'-5' exonuclease domain	IPR002562	-	0.0	81%
Blast2go	Ribonuclease H-like domain	IPR012337	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q8W105

Fln msg: Distance to subject end: 583 aas, your sequence is shorter than subject: 178 - 1049

Fln protein: MGHACDTEVAYIDIKKESPVGHGKITCFSIYCGSQADFGNGKSCVSVDVLGGGKDVLSEFSCYFGDTSIQKVWHNYSFDKHIIENHGIDVKGFHADTMHLARLWNSARSREGGYSLESLTKDPKVMDGGGAETEDELIMGKESMKSIFGKKKIKKDGTEGKVVTLPPVEELQRTERIP

Protein Length: 179

Fln nts: ATGGGTCATGCATGTGATACAGAGGTTGCATACATTGACATTAAGAAAGAGAGCCCAGTTGGTCATGGGAAGATCACTTGTTTCAGTATATATTGTGGATCTCAAGCTGATTTTGGCAATGGCAAGTCCTGTGTATCGGTAGACGTGCTGGGCGGTGGTAAAGATGTCTTGTCAGAATTTTCTTGTTATTTTGGAGATACATCTATTCAAAAGGTTTGGCATAATTATAGTTTTGACAAGCATATCATAGAAAATCATGGGATTGATGTCAAGGGGTTCCATGCTGATACGATGCATCTTGCACGACTATGGAATTCTGCAAGGAGTCGAGAAGGTGGATATTCACTTGAATCTCTTACAAAGGATCCAAAGGTCATGGATGGAGGTGGTGCAGAAACTGAAGATGAGCTGATTATGGGCAAGGAGTCTATGAAATCGATATTTGGGAAAAAAAAGATAAAGAAGGATGGCACAGAGGGGAAAGTTGTGACCCTTCCACCTGTTGAAGAGCTCCAAAGAACTGAACGCATACCATG

Fln Alignment:

sp_v1.1_unigene63245___HACDTEVAYIDIKKESPVGHGKITCFSIYCGSQADFGNGKSCVSVDVLG-GGKDVLSEFSCYFGDTSIQKVWHNYSFDKHIIENHGIDVKGFHADTMHLARLWNSARSREGGYSLESLTKDPKVMDGGGAETEDEL-IMGKESMXXXXXXXXXXXXXXXXKVVTLPPVEELQRTER
Q8W105_______________HSCDTEVSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLWDSARRIKGGYSLEALTSDPKVL--GGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIPPVEELQREDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain