SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63242

Length: 445 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene63242
CTTTTGGGTTCCTTGGATCAACTCATGGAGCTCAATTTTTCATACAATGATTTAGATGGGGCTGTTCCCAATGAGTTATTCTCTCTGCAAAATCTTCAAGTGCTAGATCTGAGTTTCAACAACTTCTCTGGCCCATTGCCCACTCCAAAGGGACTTCAGTCAATCCAATCCATCAACGTTTCAAGCAATTCCTTTTCAGATAGGCTTCCCCTCCTCGGCTTTCTTTCAAATCTGATTACCCTTAATGTTAGTAACAATTCCTTCACTGGTCCAATTCCAACAGTTATTTGCAGGAATTTGAGCTCAATCAGGATCCTTGATTTCTCGATGAATAGATTTGAGGGACGCCTTGATGAAGGGCCGCAAGAATGTAAGGTACTTGAAGAATTCCCACGAGGTTGTTGAAACCCACTTCGAACTCCGCAAGAATGTAAGGTACTTGAGG

Ace file of the UniGene sp_v1.1_unigene63242 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:2.7.11.30 1.3.1.74)	-	-	4.0e-15	40%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Araucaria angustifolia.	-	-	0.0	37%
Blast2go	leucine-rich repeat receptor-like kinase	-	-	8.41304e-16	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	8.41304e-16	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D1MEH6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 419 aas, your sequence is shorter than subject: 135 - 630

Fln protein: LLGSLDQLMELNFSYNDLDGAVPNELFSLQNLQVLDLSFNNFSGPLPTPKGLQSIQSINVSSNSFSDRLPLLGFLSNLITLNVSNNSFTGPIPTVICRNLSSIRILDFSMNRFEGRLDEGPQECKVLEEFPRGC*

Protein Length: 136

Fln nts: CTTTTGGGTTCCTTGGATCAACTCATGGAGCTCAATTTTTCATACAATGATTTAGATGGGGCTGTTCCCAATGAGTTATTCTCTCTGCAAAATCTTCAAGTGCTAGATCTGAGTTTCAACAACTTCTCTGGCCCATTGCCCACTCCAAAGGGACTTCAGTCAATCCAATCCATCAACGTTTCAAGCAATTCCTTTTCAGATAGGCTTCCCCTCCTCGGCTTTCTTTCAAATCTGATTACCCTTAATGTTAGTAACAATTCCTTCACTGGTCCAATTCCAACAGTTATTTGCAGGAATTTGAGCTCAATCAGGATCCTTGATTTCTCGATGAATAGATTTGAGGGACGCCTTGATGAAGGGCCGCAAGAATGTAAGGTACTTGAAGAATTCCCACGAGGTTGTTGAAACCCACTTCGAACTCCGCAAGAATGTAAGGTACTTGAGG

Fln Alignment:

sp_v1.1_unigene63242___LGSLDQLMELNFSYNDLDGAVPNELFSLQNLQVLDLSFNNFSGPLPTPKGLXXXXXXXXXXXXXSDRLPLLGFLSNLITLNVSNNSFTGPIPTVICRNLSSIRILDFSMNRFEGRL
D1MEH6_______________LGQLKKLQYLEFYSNNISGTIPKELGNLTNLVSLDLYFNNFTGPIPDS----------------------LGQLSKLRFLRLNNNSLTGPIPKSL-TTITALQVLDLSNNNLTGEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain