SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63225

Length: 497 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene63225
GAATGCATAGTGGCCAGTTTGGTGCAGGGAGTCTATGTCTCAGAATGCGACAGGCAGGAACGCAGGCGCGGGCTGAACGCTTTGGCTGACAAGTGGTGGACTTTCTTCAATTTCCAGCTCATTGAGAAAGCCAATGACGGAAAATCCATATTTGCTGCAGTGTACGTCTGGAACGGGGAAGCCAGCACGCCCGACGCGCCAAAGATTGTGGTGGCCTTCAGAGGAACGAACGGATACAACTGCGATTCTTCCTCACCGACATGAATTCGACCCTGCAAATCCCCAGAAACGGACTACACGAGACAACCCGTTTCCGGAAGGCTCTCGATCTCGTTCATAAGTATGTGTCGGAGCACAGTGCCAAGAACGTGTGGATCGCAGGGCATTCCCTCGGCGCCGCCATTGCGATGCTGGTGGGAAGACACATGGCCGAGGACGGATATTTACTCCAAGCCCACCTTTTCAATCCGCCCTTCATCTCGCCTCTGGTGGACAGA

Ace file of the UniGene sp_v1.1_unigene63225 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	triacylglycerol lipase, putative	-	-	3.0e-30	50%
FL-Next	sp=GDSL esterase/lipase At4g10955; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	41%
Blast2go	protein	-	-	1.815e-31	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, class 3	IPR002921	-	1.815e-31	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q680C0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 146 aas, your sequence is shorter than subject: 88 - 350

Fln protein: ECIVASLVQGVYVSECDRQERRRGLNALADKWWTFFNFQLIEKANDGKSIFAAVYVWNGEASTPDAPKIVVAFRGTNGYNCDSSSPT*

Protein Length: 89

Fln nts: GAATGCATAGTGGCCAGTTTGGTGCAGGGAGTCTATGTCTCAGAATGCGACAGGCAGGAACGCAGGCGCGGGCTGAACGCTTTGGCTGACAAGTGGTGGACTTTCTTCAATTTCCAGCTCATTGAGAAAGCCAATGACGGAAAATCCATATTTGCTGCAGTGTACGTCTGGAACGGGGAAGCCAGCACGCCCGACGCGCCAAAGATTGTGGTGGCCTTCAGAGGAACGAACGGATACAACTGCGATTCTTCCTCACCGACATGAATTCGACCCTGCAAATCCCCAGAAACGGACTACACGAGACAACCCGTTTCCGGAAGGCTCTCGATCTCGTTCATAAGTATGTGTCGGAGCACAGTGCCAAGAACGTGTGGATCGCAGGGCATTCCCTCGGCGCCGCCATTGCGATGCTGGTGGGAAGACACATGGCCGAGGACGGATATTTACTCCAAGCCCACCTTTTCAATCCGCCCTTCATCTCGCCTCTGGTGGACAGA

Fln Alignment:

sp_v1.1_unigene63225___IVASLVQGVYVSECDRQERRRGLN-ALADKWWTFFNFQLIEKAND--GKSIFAAVYVW-------NGEASTPDAPKIVVAFRGT
Q680C0_______________VAGSLVQGIYVAERDRQLQREGPELALSPIWSEFFHFRLIRKFVDDADNSIFGGIYEYKLPQQLSQTVKSMEFSPRFVIAFRGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain