SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63216

Length: 477 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene63216
CGTCGTGACCTTGGCTGTCACTCAGTCTACTCTGTAACAGTGCCAGTTCGACGTGTAAAGCCTGAGTATCAGGAGTACAGTGAAGGCTTGGAGATATAAGGAATTTAGAGTACAAGGATGTCAGTGGGCAAGTGAGTGCGTTTGATATCAAATTGGACTACCTCAGTCCAAATGATGGAAAGGCTTAAGGATGCATCCTGTCCAAGTATGCGGACCTGGTGTCGCAACATGGCGAAGAACTCGCGGCTCTGGAAACTCTTGACAATGGAAAACCGCGGGATATGGCTCGGGCGATGGATATACCATACGCAGTTGAAGTTATCCGATATTACGCTGCTGATAAAATTCATGGGCAAACGTTGAAGATGAATGGGCAGTTTCAGGGTTATACATTGCATGAACCCATTGGAGTCGTTGGTCAGATAATACCATGGAACTTTCCAATTGTGATGTTTTTCAGTAAGGTCAGTCCTGCCT

Ace file of the UniGene sp_v1.1_unigene63216 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative cytosolic aldehyde dehydrogenase n=1 Tax=Oryza sativa Japonica Group RepID=Q69XE0_ORYSJ	-	-	3.0e-29	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	cytosolic aldehyde dehydrogenase	-	-	5.32193e-39	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLF5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 319 aas, your sequence is shorter than subject: 158 - 500

Fln protein: S*PWLSLSLLCNSASSTCKA*VSGVQ*RLGDIRNLEYKDVSGQVSAFDIKLDYLSPNDGKA*GCILSKYADLVSQHGEELAALETLDNGKPRDMARAMDIPYAVEVIRYYAADKIHGQTLKMNGQFQGYTLHEPIGVVGQIIPWNFPIVMFFSKVSPA

Protein Length: 159

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCTACTCTGTAACAGTGCCAGTTCGACGTGTAAAGCCTGAGTATCAGGAGTACAGTGAAGGCTTGGAGATATAAGGAATTTAGAGTACAAGGATGTCAGTGGGCAAGTGAGTGCGTTTGATATCAAATTGGACTACCTCAGTCCAAATGATGGAAAGGCTTAAGGATGCATCCTGTCCAAGTATGCGGACCTGGTGTCGCAACATGGCGAAGAACTCGCGGCTCTGGAAACTCTTGACAATGGAAAACCGCGGGATATGGCTCGGGCGATGGATATACCATACGCAGTTGAAGTTATCCGATATTACGCTGCTGATAAAATTCATGGGCAAACGTTGAAGATGAATGGGCAGTTTCAGGGTTATACATTGCATGAACCCATTGGAGTCGTTGGTCAGATAATACCATGGAACTTTCCAATTGTGATGTTTTTCAGTAAGGTCAGTCCTGCCT

Fln Alignment:

sp_v1.1_unigene63216___GCILSKYADLVSQHGEELAALETLDNGKPRDMARAMDIPYAVEVIRYYA--ADKIHGQTLKMNGQFQGYTLHEPIGVVGQIIPWNFPIVMFFSKVSPA
B8LLF5_______________GRILYKYADLVSQHGDELAALETFDNGKPLDMARILDIPYSVEVIRYNAGFADKIHGLTLKMSGQYQGYTLHEPIGVVGQMIPWNFPILTFFSKVSPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain