SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63168

Length: 356 nt

UniGene Fasta

>sp_v1.1_unigene63168
ATGGGGACAATAGAGGTTTTCGGCGTGGAGTTAATGAGGTACCAAAACATAGAAGACGAGATGGTCCAGTTGCTCCAGATTTCCATGGCCTGCATTGCTACAGTGCTTGATCAGAGGTCAAGAATGCAAGACGTGGTGAACATGATCGAGGACATGAGGCAGGTCGAAACAGACGACATACAATCCTCTGGTGATAAATCAAAAGAATTCAATGGACAAACTCCTCCCCAGAAAGCCACACCAAAAGCACGCACCCCCACAACAAGAACATCTTGACAACACCCCCTCAACAAGCACACTTTGACAGTCAAAATTCTTCTGTTTCTGTCCATATTATAACATAGTTTCCAGTATCA

Ace file of the UniGene sp_v1.1_unigene63168

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase n=1 Tax=Malus x domestica RepID=D6N3G3_MALDO	-	-	2.0e-17	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	at2g26730-like protein	-	-	3.4978e-22	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	3.4978e-22	76%
Blast2go	transferase activity	GO:0016740	Molecular Function	3.4978e-22	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.4978e-22	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN40

Fln msg: your sequence is shorter than subject: 92 - 340

Fln protein: MGTIEVFGVELMRYQNIEDEMVQLLQISMACIATVLDQRSRMQDVVNMIEDMRQVETDDIQSSGDKSKEFNGQTPPQKATPKARTPTTRTS*

Protein Length: 93

Fln nts: ATGGGGACAATAGAGGTTTTCGGCGTGGAGTTAATGAGGTACCAAAACATAGAAGACGAGATGGTCCAGTTGCTCCAGATTTCCATGGCCTGCATTGCTACAGTGCTTGATCAGAGGTCAAGAATGCAAGACGTGGTGAACATGATCGAGGACATGAGGCAGGTCGAAACAGACGACATACAATCCTCTGGTGATAAATCAAAAGAATTCAATGGACAAACTCCTCCCCAGAAAGCCACACCAAAAGCACGCACCCCCACAACAAGAACATCTTGA___CAACACCCCCTCAACAAGCACACTTTGACAGTCAAAATTCTTCTGTTTCTGTCCATATTATAACATAGTTTCCAGTATCA

Fln Alignment:

sp_v1.1_unigene63168___TIEVFGVELMRYQNIEDEMVQLLQISMACIATVLDQRSRMQDVVNMIEDMRQVETDD--IQSSGDKSKEFNGQ
B8LN40_______________TAEVFDVELMRYQNIEEEMVQLLQIAMACVAAVPDQRPRMQDVVKMIEDMRQFETDDGNRQSSDDKSKESNGQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain