SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63128

Length: 394 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene63128
TCAGGGTGTTGCTACGGATTGTGTTCGGCAGTTGTGTCGTGGTTCAGTCAAAGAAAAAGTCAGTTGCTTTGAGCTGTTCTGAGGCTGAGTATATGGCTACTAACCAGGCTAGTTGTGAGGCCATTTGGCTTCGCAAGTTGTTGTATGGCCTATTTGATCAAGAGTTGAGACCGACGGCTATTCACTGCGATAATCAGAGTTGCATTAAACTCACGGAGAATCCAGCGTTTCATGACAGGTCAAAACACATTGACATCAAATATCATTTCATCAGCGACTATGTTCAAAAGAGGGCAGTGAAGCTGGAGTATATATCGACAAATGAGCAGGTGATCGATGTTCTCATGAAGTCCTTGCCAAGAGGCAAGCATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v1.1_unigene63128 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative gag-pol polyprotein (Fragment) n=1 Tax=Picea abies RepID=B2KZG9_PICAB	-	-	2.0e-26	54%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	42%
Blast2go	retrotransposon unclassified	-	-	3.55473e-26	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: your sequence is shorter than subject: 125 - 542

Fln protein: RVLLRIVFGSCVVVQSKKKSVALSCSEAEYMATNQASCEAIWLRKLLYGLFDQELRPTAIHCDNQSCIKLTENPAFHDRSKHIDIKYHFISDYVQKRAVKLEYISTNEQVIDVLMKSLPRGKHE*

Protein Length: 126

Fln nts: TCAGGGTGTTGCTACGGATTGTGTTCGGCAGTTGTGTCGTGGTTCAGTCAAAGAAAAAGTCAGTTGCTTTGAGCTGTTCTGAGGCTGAGTATATGGCTACTAACCAGGCTAGTTGTGAGGCCATTTGGCTTCGCAAGTTGTTGTATGGCCTATTTGATCAAGAGTTGAGACCGACGGCTATTCACTGCGATAATCAGAGTTGCATTAAACTCACGGAGAATCCAGCGTTTCATGACAGGTCAAAACACATTGACATCAAATATCATTTCATCAGCGACTATGTTCAAAAGAGGGCAGTGAAGCTGGAGTATATATCGACAAATGAGCAGGTGATCGATGTTCTCATGAAGTCCTTGCCAAGAGGCAAGCATGAGTGA___CAGCCAAGGTCACGACG

Fln Alignment:

sp_v1.1_unigene63128___ALSCSEAEYMATNQASCEAIWLRKLL--YGLFDQELRPTAIHCDNQSCIKLTENPAFHDRSKHIDI
Q9M5J7_______________ALSTTEAEYMVATHASQGSIWLQRLCSGIGLVQQVVR---LDCEIQSAIFMAKNPAYDSKTNHIDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain