SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63076

Length: 496 nt

UniGene Fasta

>sp_v1.1_unigene63076
ATGGGGAAAATGGAAGGCATGGTTTGATTTGGATAGAATCTCGAGGAAAAGCCAGCCTCCCTTCTTCGTCCCGACAGGCGATCGACAGAAATATGTTATTTTACTGCAAAGCTACGAAAATCCTCCAAGATGAGGCGATGGAGAAATTGCTCGGGAGCATGAGGCGTATAGTTCTTCGCACTCGCTACTTCTCCACAGTTGTTTCTAATGGGACGAACGTATTACTGTGGTAGTGCAAGGGAAGAGATAAGCCCTGCAAAGAATTCCCATTTTAAAGACCTGAAGCCGTGCGAGGCCAACAGAGATCCATTATCCCCAATAAGTTTCCTGGAGAGAGCAAGCAGCGTGTATAGAGAAGGAACTTCAGTTGTCTATGGATCTACTCGATTTACGTGGGCGGAAACAGCAGAGCGCTGTCGCAGGCTTGCCTCCGTGCTTCGCTCTCTCAATGTCAAAACNGGAGACGTTGTAAGTTATAGACAATCTGTGGCTCTTA

Ace file of the UniGene sp_v1.1_unigene63076

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acyl:coa ligase acetate-coa synthetase-like protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H653_POPTR	-	-	4.0e-16	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	acyl:coa ligase acetate-coa synthetase-like protein	-	-	6.35071e-16	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Benzoate--CoA ligase.	EC:6.2.1.25	-	6.35071e-16	73%

Source	KEGGs	Term	e value	Identity
Blast2go	Benzoate degradation	00362	6.35071e-16	73%
Blast2go	Aminobenzoate degradation	00627	6.35071e-16	73%
Blast2go	Metabolic pathways	01100	6.35071e-16	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	glucosinolate biosynthetic process	GO:0019761	Biological Process	6.35071e-16	73%
Blast2go	benzoate-CoA ligase activity	GO:0018858	Molecular Function	6.35071e-16	73%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWM6

Fln msg: Distance to subject end: 486 aas, your sequence is shorter than subject: 96 - 569

Fln protein: MGRTYYCGSAREEISPAKNSHFKDLKPCEANRDPLSPISFLERASSVYREGTSVVYGSTRFTWAETAERCRRLASVLRSLNVKTGDVVSYRQSVAL

Protein Length: 97

Fln nts: ATGGGGAAAATGGAAGGCATGGTTTGATTTGGATAGAATCTCGAGGAAAAGCCAGCCTCCCTTCTTCGTCCCGACAGGCGATCGACAGAAATATGTTATTTTACTGCAAAGCTACGAAAATCCTCCAAGATGAGGCGATGGAGAAATTGCTCGGGAGCATGAGGCGTATAGTTCTTCGCACTCGCTACTTCTCCACAGTTGTTTCTA_-_ATGGGACGAACGTATTACTGTGGTAGTGCAAGGGAAGAGATAAGCCCTGCAAAGAATTCCCATTTTAAAGACCTGAAGCCGTGCGAGGCCAACAGAGATCCATTATCCCCAATAAGTTTCCTGGAGAGAGCAAGCAGCGTGTATAGAGAAGGAACTTCAGTTGTCTATGGATCTACTCGATTTACGTGGGCGGAAACAGCAGAGCGCTGTCGCAGGCTTGCCTCCGTGCTTCGCTCTCTCAATGTCAAAACaGGAGACGTTGTAAGTTATAGACAATCTGTGGCTCTTA

Fln Alignment:

sp_v1.1_unigene63076___DLKPCEANRDPLSPISFLERASSVYREGTSVVYGSTRFTWAETAERCRRLASVLRSLNVKTGDVV
A9NWM6_______________DLPKCPANYTALTPLWFIQRAALVYPKRKSVIHGARQYTWDQTYERCRRLASALAKRSIGPGTTV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
71		66	33		0.997459
72		66		33	0.997459
76	66	33			0.997457
77			66	33	0.997459
348	33		66		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain