SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63056

Length: 401 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene63056
ATGGGGACTGTGTTTTTCAGTTTTGGCTCATTTTCTCAACGCGATTGCTGTTGTGTATTGTGTTGATTTCGTTTAAAAGATGCAGATATTCGTGAAGACGTTGACCGGTAAGACCATAACCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTAAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCCGACCAGCAGCGTCTCATCTTTGCTGGTAAACAGTTGGAGGATGGACGCACTCTTGCCGACTACAACATCCAGAAGGAAGGGATTCCTCCTGATCAGCAGAGGCTCATATTTGCTGGCAAACAGCTGGAGGATGGGCGAACTCTGGCCGACTATAACATCCAGAAGGAATCTACACTTCACCTTGTTTTGCGTCTGCGTGGTGGGTTTT

Ace file of the UniGene sp_v1.1_unigene63056

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	polyubiquitin containing 7 ubiquitin monomers	-	-	69%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	69%
Blast2go	ubiquitin isoform cra_a	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of cellular transcription, DNA-dependent	GO:0045941	Biological Process	75%
Blast2go	induction of apoptosis by extracellular signals	GO:0008624	Biological Process	75%
Blast2go	anti-apoptosis	GO:0006916	Biological Process	75%
Blast2go	positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	GO:0051437	Biological Process	75%
Blast2go	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145	Biological Process	75%
Blast2go	negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	GO:0051436	Biological Process	75%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	nucleoplasm	GO:0005654	Cellular Component	75%
Blast2go	cytosol	GO:0005829	Cellular Component	75%
Blast2go	endosome membrane	GO:0010008	Cellular Component	75%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 107 - 229

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF

Protein Length: 108

Fln nts: ATGGGGACTGTGTTTTTCAGTTTTGGCTCATTTTCTCAACGCGATTGCTGTTGTGTATTGTGTTGATTTCGTTTAAAAG_-_ATGCAGATATTCGTGAAGACGTTGACCGGTAAGACCATAACCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTAAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCCGACCAGCAGCGTCTCATCTTTGCTGGTAAACAGTTGGAGGATGGACGCACTCTTGCCGACTACAACATCCAGAAGGAAGGGATTCCTCCTGATCAGCAGAGGCTCATATTTGCTGGCAAACAGCTGGAGGATGGGCGAACTCTGGCCGACTATAACATCCAGAAGGAATCTACACTTCACCTTGTTTTGCGTCTGCGTGGTGGGTTTT

Fln Alignment:

sp_v1.1_unigene63056___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ----------------------------------------------KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Q7FPA4_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain