SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62997

Length: 593 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene62997 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	casein kinase II, alpha chain, putative (EC:2.7.11.23); K03097 casein kinase 2, alpha polypeptide [EC:2.7.11.1]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	casein kinase ii alpha subunit	-	-	97%

Source	ECs	Term	Type	e value	Identity
AutoFact	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	photoperiodism	GO:0009648	Biological Process	97%
Blast2go	inflorescence development	GO:0010229	Biological Process	97%
Blast2go	binding	GO:0005488	Molecular Function	97%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	97%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVF1

Fln msg: Overlapping hits, possible frame ERROR between 377 and 376, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 138 aas, your sequence is shorter than subject: 162 - 435

Test code: 0

Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.

Fln protein: S*PWLSLRVYADVNVIRPKEYWDYEALTVQWGDQEDYEVVRKVGRGKYSEVFEGVNSINNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPxxSSDDRPYYIYELLKALDYCHSQGIMHRDVKRMDDS*

Protein Length: 163

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGTTTATGCCGACGTTAACGTTATACGGCCTAAGGAGTACTGGGACTACGAGGCGCTCACAGTGCAATGGGGTGATCAGGAAGACTATGAGGTTGTGCGAAAAGTGGGCAGGGGCAAGTACAGTGAGGTTTTTGAGGGTGTCAATAGCATTAACAATGAGCGATGCATTATCAAGATATTGAAACCTGTCAAGAAGAAGAAGATCAAGAGAGAGATCAAAATATTGCAGAACCTTTGCGGAGGTCCAAATATTGTGAAGCTGCTTGATATAGTGCGGGACCAGCAATCTAAAACTCCTAGCTTGATTTTTGAATATGTAAACAACACAGATTTCAAAGTCCTTTATCCGxxxxxxAGCAGTGATGACAGGCCATACTATATTTATGAGCTTTTAAAGGCTTTAGATTACTGTCACTCCCAGGGAATCATGCATCGTGATGTTAAGCGAATGGATGATAGTTAATTAGTTGGATCACTTGCAAATATATCACTGTGTTTTAAATACTATCTTTGTGTTCTTTCTTAGAAATTCGGTATCAGGTTATGGATGGATGCTTATCAATCAGTTGG

Fln Alignment:

sp_v1.1_unigene62997___RVYADVNVIRPKEYWDYEALTVQWGDQEDYEVVRKVGRGKYSEVFEGVNSINNERCXXXXXXXXXXXXXXXXXXILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSSDDRPYYIYELLKALDYCHSQGIMHRDVK
A9NVF1_______________RVYADVNVVRPKEYWDYEALTVQWGDQEDYEVVRKVGRGKYSEVFEGVNSINNERCIIKILKPVKKKKIKREIKILQNLSEGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDFDIRYYIYELLKALDYCHSQGIMHRDVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain