SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62969

Length: 354 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene62969
ATGTTGTAGTTGGGAAAAGGGCAAGTCACTATTGCAGCGTGATTCAAGCAAAATATTAGCCTGTCTGTAGGAGAAATGCAAAAGAATCCAATTAACTTTACACAGGTATCTATGCTTGTGGATGACATTTTGAAGAATGTGGAGTTTGATGCTGTAAGAATCATTTTCAACGGATTTCAGTCAATAGTCTCATCTGCACCAACTGTGTCCACTGTATTATCTGCTGAGGTAAGGTTATAACTTCATATTTTTGTTGTGAATGATCATGTCAGATAACCCCAGTCGCGTTTGCTCCTGTGGCAGTTTTTTGGCACTTTCACTTGATTGTATGTTGGGGTTCTGGATGTGTTGTAG

Ace file of the UniGene sp_v1.1_unigene62969 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP synthase gamma chain n=1 Tax=Picea sitchensis RepID=A9NLA3_PICSI	-	-	2.0e-22	79%
FL-Next	sp=ATP synthase gamma chain; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	atp synthase gamma	-	-	4.56826e-22	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	4.56826e-22	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, F1 complex, gamma subunit	IPR000131	-	4.56826e-22	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLA3

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 61 aas, your sequence is shorter than subject: 80 - 329

Fln protein: ML*LGKGQVTIAA*FKQNISLSVGEMQKNPINFTQVSMLVDDILKNVEFDAVRIIFNGFQSIVSSAPTVSTVLSAEVRL*

Protein Length: 81

Fln nts: ATGTTGTAGTTGGGAAAAGGGCAAGTCACTATTGCAGCGTGATTCAAGCAAAATATTAGCCTGTCTGTAGGAGAAATGCAAAAGAATCCAATTAACTTTACACAGGTATCTATGCTTGTGGATGACATTTTGAAGAATGTGGAGTTTGATGCTGTAAGAATCATTTTCAACGGATTTCAGTCAATAGTCTCATCTGCACCAACTGTGTCCACTGTATTATCTGCTGAGGTAAGGTTATAACTTCATATTTTTGTTGTGAATGATCATGTCAGATAACCCCAGTCGCGTTTGCTCCTGTGGCAGTTTTTTGGCACTTTCACTTGATTGTATGTTGGGGTTCTGGATGTGTTGTAG

Fln Alignment:

sp_v1.1_unigene62969___KGQVTIAA*FKQNISLSVGEMQKNPINFTQVSMLVDDILKNVEFDAVRIIFNGFQSIVSSAPTVSTVLSAEV
A9NLA3_______________KGKSILQRDSSKDISLSVGEMQKNPINFTQVSMLVDDILKNVEFDAVRIIFNRFQSIVSFVPTVSTILSAEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain