SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62946

Length: 407 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene62946
ATTGGGTAACCGAGAAAAACCTTTACTCTTTGTAAACAATGACTTGTTGATTAAGGCATCTCTTTGAAATCTGCTTATAGCTCAAATGTGACTGAGACAATGGTGCCCAAGCTCAACATGGTGCTACCACACATGGGTCCAGATCGTATGTTTGATGGAGCTTTTGATGAAGCTATTACTTGTACTTGTAAGTACAATGGCTTGGGTAAGTCTGATTTTGTAGTTGGATCGGAGGAAAATATTTTTAACTGGAAGAGAATTCTGCTCCGGAGAGCGGTGTTGTGGATGCACGTATCGGGGGCTGATGGTAAAACAGTAATGGCAATGGTCCTCTGCAATGATCAAGAAATTAAAGGTGGTGCTTTTTTGCCTGTTGCGCTTATCTGGGCTACATTCGTTACCTATCA

Ace file of the UniGene sp_v1.1_unigene62946

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=1 Tax=Pinus lambertiana RepID=Q1L6F3_PINLA	-	-	7.0e-11	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	unknown [Picea sitchensis]	-	-	6.18189e-11	56%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQB7

Fln msg: Distance to subject end: 585 aas, atg_distance in limit (1-15): atg_distance = 4, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 102 - 726

Fln protein: MVPKLNMVLPHMGPDRMFDGAFDEAITCTCKYNGLGKSDFVVGSEENIFNWKRILLRRAVLWMHVSGADGKTVMAMVLCNDQEIKGGAFLPVALIWATFVTY

Protein Length: 103

Fln nts: ATTGGGTAACCGAGAAAAACCTTTACTCTTTGTAAACAATGACTTGTTGATTAAGGCATCTCTTTGAAATCTGCTTATAGCTCAAATGTGACTGAGACA_-_ATGGTGCCCAAGCTCAACATGGTGCTACCACACATGGGTCCAGATCGTATGTTTGATGGAGCTTTTGATGAAGCTATTACTTGTACTTGTAAGTACAATGGCTTGGGTAAGTCTGATTTTGTAGTTGGATCGGAGGAAAATATTTTTAACTGGAAGAGAATTCTGCTCCGGAGAGCGGTGTTGTGGATGCACGTATCGGGGGCTGATGGTAAAACAGTAATGGCAATGGTCCTCTGCAATGATCAAGAAATTAAAGGTGGTGCTTTTTTGCCTGTTGCGCTTATCTGGGCTACATTCGTTACCTATCA

Fln Alignment:

sp_v1.1_unigene62946___VTETMVPKLN-------MVLPHMGPDRMFDGAFDEAITCTCKYNGLGKSDFVVGSEENIFNWKRILLRRAVLWMHVSGAD--GKTVMAMVLCNDQEIKG
C0PQB7_______________VNEAIVPKLTNDPQKNAVMLQQIGSDDMFDGVLDEAPPSP-------KSDFVVGLEKNISNVKRILLDRDVSVVGVDGMGGVGKTTMAMALSDDQEIKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain