SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62943

Length: 430 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene62943
ATGGGGGATGAGCTTTGTAGGTATTATTGGCAACTGAATAAATCAGGCAACTACGGTCTTGAATGTACATTGTTGCCCCTTCAAGTTGACAAGCCATGGGACACCACTCATGCTGCAACCAGCAGAAAGTGAAGAGAGGCCTGTGGTCACCAGAGGAGGATGAAAAAACTTATTAATTACATCAATAACAATGGCTATGGCTGCTGGAGTGAAGTGCCAGAGAAAGCAGGATTGCAACGCTGTGGTAAGAGTTGCAGACTTCGGTGGATAAATTACTTGAGGCCTAATATTAGGCGTGGGAAATTCACTCCAGAAGAAGAAAACTTATTATCAGTCTCCATAGCGTTGTCGGTAACAGGTGGGCACACATCGCATCACATTTACCAGGTAGAACAGATAACGAGATCAAGAATTACTGGAACTCGTGGAT

Ace file of the UniGene sp_v1.1_unigene62943

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATMYB26 (MYB DOMAIN PROTEIN 26); DNA binding / transcription factor; K09422 myb proto-oncogene protein, plant	-	-	1.0e-20	46%
FL-Next	tr=R2R3-MYB transcription factor MYB2; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	49%
Blast2go	atmyb26 (myb domain protein 26) dna binding transcription factor	-	-	1.28167e-24	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	1.28167e-24	56%
Blast2go	secondary cell wall biogenesis	GO:0009834	Biological Process	1.28167e-24	56%
Blast2go	anther dehiscence	GO:0009901	Biological Process	1.28167e-24	56%
Blast2go	nucleus	GO:0005634	Cellular Component	1.28167e-24	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Homeodomain-like	IPR009057	-	1.28167e-24	56%
Blast2go	Homeodomain-related	IPR012287	-	1.28167e-24	56%
Blast2go	Myb, DNA-binding	IPR014778	-	1.28167e-24	56%
Blast2go	Myb transcription factor	IPR015495	-	1.28167e-24	56%
Blast2go	Myb domain, DNA-binding	IPR017930	-	1.28167e-24	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A5JYE6

Fln msg: Distance to subject end: 336 aas, your sequence is shorter than subject: 111 - 448

Fln protein: MGHHSCCNQQKVKRGLWSPEEDEKTY*LHQ*QWLWLLE*SARESRIATLW*ELQTSVDKLLEA*Y*AWEIHSRRRKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSW

Protein Length: 112

Fln nts: ATGGGGGATGAGCTTTGTAGGTATTATTGGCAACTGAATAAATCAGGCAACTACGGTCTTGAATGTACATTGTTGCCCCTTCAAGTTGACAAGCC_-_ATGGGACACCACTCATGCTGCAACCAGCAGAAAGTGAAGAGAGGCCTGTGGTCACCAGAGGAGGATGAAAAAACTTATTAATTACATCAATAACAATGGCTATGGCTGCTGGAGTGAAGTGCCAGAGAAAGCAGGATTGCAACGCTGTGGTAAGAGTTGCAGACTTCGGTGGATAAATTACTTGAGGCCTAATATTAGGCGTGGGAAATTCACTCCAGAAGAAGAAAACTTATTATCAGTCTCCATAGCGTTGTCGGTAACAGGTGGGCACACATCGCATCACATTTACCAGGTAGAACAGATAACGAGATCAAGAATTACTGGAACTCGTGGAT

Fln Alignment:

sp_v1.1_unigene62943___MGHHSCCNQQKVKRGLWSPEEDEKTYXXXXXXXXXXXE*SARESRIATLW*ELQTSVDKLLEA*Y*AWEIHSRRRKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSW
A5JYE6_______________MGRHLCCNQQKVKRGLWSPDEDEKLINYITKYGYGCWSEVPEKSGLQRCGKSCRLRWINYLRPDIRRGNFSPNEEKLIIHLHTMVGNRWAYIASHLPGRTDNEIKNYWNSW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain