SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62914

Length: 487 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene62914
ATTGGGCTGTGAGGGCAGAGTTCAACCTGACGTGTCCAATTTGTCTTGATCTTGTTTTTTACTCGTAGCTTTAGGCTGTGGGCATATTTTCTGCAATAGTTGTGCTTGTGCTGCTGCTTCTGTCCCCATTATTGAAGATATCAAGACTGCAAAACCCTTTGCAAAGTGTCCCTTATGTAGACAGGCTTTGCAGGCAGGAGTTTTTGCAGATTCTGTGCATCTAGCGGAATTGAATTTGCTTTTAAAGAAAAGGTGCAAAAGATATTGGAAAGAACGGTTATATGCAGAGAAGGCAGAGAGAACGAAGCAAGAAAAAGATTATCGGTCTGTGCAGACTCACTTAGTCTTGGGATTTATTACAAACTCTCTACTGTGAAATGAGCTTTATCCATTTGGAATGAGATGATAGTTTTTTGTCTATTCAGAGGAATGTTGAAAACTCATTAACTTGGTAAGGGTGCGAGAAATAAAGATTGGCAAAATATTT

Ace file of the UniGene sp_v1.1_unigene62914

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related	-	-	4.0e-24	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	protein	-	-	8.40779e-45	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	8.40779e-45	72%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	8.40779e-45	72%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	8.40779e-45	72%
Blast2go	systemic acquired resistance	GO:0009627	Biological Process	8.40779e-45	72%
Blast2go	response to benzoic acid stimulus	GO:0080021	Biological Process	8.40779e-45	72%
Blast2go	response to nitrate	GO:0010167	Biological Process	8.40779e-45	72%
Blast2go	regulation of salicylic acid metabolic process	GO:0010337	Biological Process	8.40779e-45	72%
Blast2go	salicylic acid biosynthetic process	GO:0009697	Biological Process	8.40779e-45	72%
Blast2go	nucleus	GO:0005634	Cellular Component	8.40779e-45	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8S4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 125 - 233

Fln protein: LGCEGRVQPDVSNLS*SCFLLVALGCGHIFCNSCACAAASVPIIEDIKTAKPFAKCPLCRQALQAGVFADSVHLAELNLLLKKRCKRYWKERLYAEKAERTKQEKDYRSVQTHLVLGFITNSLL*

Protein Length: 126

Fln nts: ATTGGGCTGTGAGGGCAGAGTTCAACCTGACGTGTCCAATTTGTCTTGATCTTGTTTTTTACTCGTAGCTTTAGGCTGTGGGCATATTTTCTGCAATAGTTGTGCTTGTGCTGCTGCTTCTGTCCCCATTATTGAAGATATCAAGACTGCAAAACCCTTTGCAAAGTGTCCCTTATGTAGACAGGCTTTGCAGGCAGGAGTTTTTGCAGATTCTGTGCATCTAGCGGAATTGAATTTGCTTTTAAAGAAAAGGTGCAAAAGATATTGGAAAGAACGGTTATATGCAGAGAAGGCAGAGAGAACGAAGCAAGAAAAAGATTATCGGTCTGTGCAGACTCACTTAGTCTTGGGATTTATTACAAACTCTCTACTGTGA___AATGAGCTTTATCCATTTGGAATGAGATGATAGTTTTTTGTCTATTCAGAGGAATGTTGAAAACTCATTAACTTGGTAAGGGTGCGAGAAATAAAGATTGGCAAAATATTT

Fln Alignment:

sp_v1.1_unigene62914___FLLVALGCGHIFCNSCACAAASVPIIEDIKTAKPFAKCPLCRQALQAGVFADSVHLAELNLLLKKRCKRYWKERLYAEKAERTKQEKDYRSVQTHLVLGFI
D5A8S4_______________FYPVALGCGHLFCNSCACAAASVPIDEGIKTAKPLAKCPICR---QAGVFADSVHLAELNLLLKKRCKGYWKERLY---AERMKQEKDYRSLQTNLVLGFM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain