SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62903

Length: 483 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene62903
AGAATGCCGAACTTATGTACAATCACCAGCTGCCTTCAAAAAAGAGGAAGTTAAATTATGTGCAGTCTGCACAGATTGAGAAGGGAAACAATTTGTCAATGGATGATAGCCCAACTTCTTGTCATGACTCGTCTCAGCGCAAAAGGCATCAGGCCCCGAGCAAAATCTCTGGCCAACAAAGGATGGCCGCGCCCAAAAGAATCGCTTCTGTGCGGACAAGATCTGAGGAATCCCCGATAAGCGATGGCTACCGGTGGCGAAAATACGGGCAAAAGTCGACAAGAAACAATCCACGTCCGAGATGTTATTACAGATGTGCTATGGCGCCCGGTTGCCCAGTTAAAAAACAGGTTCAGCGATGCGCCGAAGACCCAACGATTGTAAAAACAACCTACGAAGGCGAGCATACTCATATTCATCCTCTGAGTATGTATACATCAAATTTCGTAGCAGAAAACCAGTTTATGCCTGTTTCAGTGGCCA

Ace file of the UniGene sp_v1.1_unigene62903

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WRKY transcription factor 1 (Fragment) n=2 Tax=Pinaceae RepID=B2KZJ7_PICAB	-	-	2.00386e-43	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	wrky dna-binding protein 6	-	-	4.7504e-43	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stimulus	GO:0050896	Biological Process	4.7504e-43	64%
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	4.7504e-43	64%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	4.7504e-43	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA-binding WRKY	IPR003657	-	4.7504e-43	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABY6

Fln msg: Distance to subject end: 180 aas, your sequence is shorter than subject: 160 - 411

Fln protein: NAELMYNHQLPSKKRKLNYVQSAQIEKGNNLSMDDSPTSCHDSSQRKRHQAPSKISGQQRMAAPKRIASVRTRSEESPISDGYRWRKYGQKSTRNNPRPRCYYRCAMAPGCPVKKQVQRCAEDPTIVKTTYEGEHTHIHPLSMYTSNFVAENQFMPVSVA

Protein Length: 161

Fln nts: AGAATGCCGAACTTATGTACAATCACCAGCTGCCTTCAAAAAAGAGGAAGTTAAATTATGTGCAGTCTGCACAGATTGAGAAGGGAAACAATTTGTCAATGGATGATAGCCCAACTTCTTGTCATGACTCGTCTCAGCGCAAAAGGCATCAGGCCCCGAGCAAAATCTCTGGCCAACAAAGGATGGCCGCGCCCAAAAGAATCGCTTCTGTGCGGACAAGATCTGAGGAATCCCCGATAAGCGATGGCTACCGGTGGCGAAAATACGGGCAAAAGTCGACAAGAAACAATCCACGTCCGAGATGTTATTACAGATGTGCTATGGCGCCCGGTTGCCCAGTTAAAAAACAGGTTCAGCGATGCGCCGAAGACCCAACGATTGTAAAAACAACCTACGAAGGCGAGCATACTCATATTCATCCTCTGAGTATGTATACATCAAATTTCGTAGCAGAAAACCAGTTTATGCCTGTTTCAGTGGCCA

Fln Alignment:

sp_v1.1_unigene62903___DDSPTSCHDSSQRKRHQAPSKISGQQRMAAPKRIASVRTRSEESPISDGYRWRKYGQKSTRNNPRPRCYYRCAMAPGCPVKKQVQRCAEDPTIVKTTYEGEHTHIHPLSMYTSN
D5ABY6_______________DDGDENESDSKRRKKENNTVDIVAASRAIREPRVV-VQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNA-GCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain