SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62869

Length: 438 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene62869
GACAGTCCCAGGGTGGTTCACAGTCGTCTTCGTCGACCACATTGGAAGAAAATCAATTCAGCTCATGGGATTTTTTTTCATGACACTCTTTATGTTCACGCTTGCTATTCCGTACCACCACTGGGTAGGAGGCGACCATCAGGCGGGCTTTCTGGTACTTTATTCCTTCACGTTCTTCTTTTCAAACTTCGGTCCAAACGCCACCACATTCATCGTACCAGCGGAAATCTTCCCTGCAAGGATTCGTTCAACATGTCACGGCATATCGGCAGCAGCAGGAAAAGCAGGAGCCATAATAGGATACTTGGGCTTTGCCTACGCAGCTGAGAGCACTAATAGAAAACAAGTCGATCCAGGGTACCACACGGGTATTGGCATGAAGCATTCTCTGCCATGCTTAGGAGTAACAAATGCTATCGGTTTCCTTTGCACGTTCCT

Ace file of the UniGene sp_v1.1_unigene62869 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative phosphate transporter n=1 Tax=Cryptomeria japonica RepID=Q1XG57_CRYJA	-	-	3.0e-40	58%
FL-Next	tr=Putative phosphate transporter; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	72%
Blast2go	phosphate transporter	-	-	2.53789e-41	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	General substrate transporter	IPR005828	-	2.53789e-41	82%
Blast2go	Sugar transporter, conserved site	IPR005829	-	2.53789e-41	82%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	2.53789e-41	82%
Blast2go	Major facilitator superfamily domain	IPR020846	-	2.53789e-41	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q1XG57

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 145 - 544

Fln protein: TVPGWFTVVFVDHIGRKSIQLMGFFFMTLFMFTLAIPYHHWVGGDHQAGFLVLYSFTFFFSNFGPNATTFIVPAEIFPARIRSTCHGISAAAGKAGAIIGYLGFAYAAESTNRKQVDPGYHTGIGMKHSLPCLGVTNAIGFLCTF

Protein Length: 146

Fln nts: GACAGTCCCAGGGTGGTTCACAGTCGTCTTCGTCGACCACATTGGAAGAAAATCAATTCAGCTCATGGGATTTTTTTTCATGACACTCTTTATGTTCACGCTTGCTATTCCGTACCACCACTGGGTAGGAGGCGACCATCAGGCGGGCTTTCTGGTACTTTATTCCTTCACGTTCTTCTTTTCAAACTTCGGTCCAAACGCCACCACATTCATCGTACCAGCGGAAATCTTCCCTGCAAGGATTCGTTCAACATGTCACGGCATATCGGCAGCAGCAGGAAAAGCAGGAGCCATAATAGGATACTTGGGCTTTGCCTACGCAGCTGAGAGCACTAATAGAAAACAAGTCGATCCAGGGTACCACACGGGTATTGGCATGAAGCATTCTCTGCCATGCTTAGGAGTAACAAATGCTATCGGTTTCCTTTGCACGTTCCT

Fln Alignment:

sp_v1.1_unigene62869___TVPG-WFTVVFVDHIGRKSIQLMGXXXXXXXXXXLAIPYHHWVG---------GDHQAGFLVLYSFTFFFSNFGPNATTFIVPAEIFPARIRSTCHXXXXXXXXXXXXXXXXGFAYAAESTNRKQVDPGYHTGIGMKHSLPCLGVTNAIGFLCTF
Q1XG57_______________TVPGYWFTVFFIDRIGRFTIQLMGFFFMTVFMFALAIPYNHWRGTKCGDDYCDGNHIA-FVVLYSFTFFFANFGPNATTFIVPAEVFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSTHQSEVDHGYHKGIGVKNSLILLGVTNAMGFLFTF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain