SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62844

Length: 395 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene62844
ATGGGGGCCGACCTTACTAAAGGACCAGCCAACATCTGGGTTCAGGCAAACTGAGCAAACCATCGTGTCTGCCCAAGTAGTGAAGGCTGATGCAAAAGCCGGCGCCGAAATCTATCATGGCATCGAGACCTGCAAGCAGAAGGTGCTGCAGCTTCTCCAGGAATCAGGCCTTCCAAGAGGATTACTCCCTCCAGAGGGCATAGAGGAGTGCGGATTTGTGAGGGAGACTGGGTTCGTCTGGGTAAAACGTCAGGAGAAATACGAGTATCTGTACAAGACAACTGGAAGTGTGACGTCATATGCCCCAGAAGTGAGCTCATACGTTGAGAAGGGAAAGATGAAGAAGATAAAGGGAGTGAAGGCCAAGGAGTCTCACATCTGGTTTACAGTCACTG

Ace file of the UniGene sp_v1.1_unigene62844

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF538 domain containing protein	-	-	4.0e-22	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	unknown [Picea sitchensis]	-	-	6.24011e-35	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF538	IPR007493	-	6.24011e-35	75%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYE3

Fln msg: Distance to subject end: 41 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 131 - 151

Fln protein: WGPTLLKDQPTSGFRQTEQTIVSAQVVKADAKAGAEIYHGIETCKQKVLQLLQESGLPRGLLPPEGIEECGFVRETGFVWVKRQEKYEYLYKTTGSVTSYAPEVSSYVEKGKMKKIKGVKAKESHIWFTVT

Protein Length: 132

Fln nts: _-_ATGGGGGCCGACCTTACTAAAGGACCAGCCAACATCTGGGTTCAGGCAAACTGAGCAAACCATCGTGTCTGCCCAAGTAGTGAAGGCTGATGCAAAAGCCGGCGCCGAAATCTATCATGGCATCGAGACCTGCAAGCAGAAGGTGCTGCAGCTTCTCCAGGAATCAGGCCTTCCAAGAGGATTACTCCCTCCAGAGGGCATAGAGGAGTGCGGATTTGTGAGGGAGACTGGGTTCGTCTGGGTAAAACGTCAGGAGAAATACGAGTATCTGTACAAGACAACTGGAAGTGTGACGTCATATGCCCCAGAAGTGAGCTCATACGTTGAGAAGGGAAAGATGAAGAAGATAAAGGGAGTGAAGGCCAAGGAGTCTCACATCTGGTTTACAGTCACTG

Fln Alignment:

sp_v1.1_unigene62844___VSAQVVKADAKAGAEIYHGIETCKQKVLQLLQESGLPRGLLPPEGIEECGFVRETGFVWVKRQEKYEYLYKTTGSVTSYAPEVSSYXXXXXXXXXXXXXXXXSHIWF
A9NYE3_______________MSTQVVKLDAKAGAEVYHGSEICWQKVLELVQEMGLPRGLLPLEGIEECGFVRETGFVWVKRKKKYEYLYKTTGILSSYAPEISAYVEKGKMKKITGVKAKDFHIWF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain