SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62801

Length: 290 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene62801
CAGAAATATCACATCCATTGCAAGGTGGAGTTCTCAAATCAAGGTTGCTGCTGATTATTATTTAAGCTTTCTGGAACAGCTCTGTGGCTCAAATATGGCAAAACCATTGGATTATGTAGAAACCATGAAGCTTGAAATACAACGCCTTCAGTTGAATATATCAGCTGCTGAAAGAGATAGGGCACTACTGTCTGTTGGTCGTGACCCTGCTACTATTGATCCTAATAGATTGTTAGAACCCCACTATGTGGCACAGCTACGGAGAACTGCACAAAATCTTGCATTGTCAA

Ace file of the UniGene sp_v1.1_unigene62801 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SAC domain protein 9 n=4 Tax=Arabidopsis RepID=Q7XZU0_ARATH	-	-	2.0e-17	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	sac domain protein 9	-	-	3.08735e-34	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphatidylinositol metabolic process	GO:0046488	Biological Process	3.08735e-34	71%
Blast2go	response to osmotic stress	GO:0006970	Biological Process	3.08735e-34	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A916

Fln msg: Distance to subject end: 367 aas, your sequence is shorter than subject: 96 - 538

Fln protein: RNITSIARWSSQIKVAADYYLSFLEQLCGSNMAKPLDYVETMKLEIQRLQLNISAAERDRALLSVGRDPATIDPNRLLEPHYVAQLRRTAQNLALS

Protein Length: 97

Fln nts: CAGAAATATCACATCCATTGCAAGGTGGAGTTCTCAAATCAAGGTTGCTGCTGATTATTATTTAAGCTTTCTGGAACAGCTCTGTGGCTCAAATATGGCAAAACCATTGGATTATGTAGAAACCATGAAGCTTGAAATACAACGCCTTCAGTTGAATATATCAGCTGCTGAAAGAGATAGGGCACTACTGTCTGTTGGTCGTGACCCTGCTACTATTGATCCTAATAGATTGTTAGAACCCCACTATGTGGCACAGCTACGGAGAACTGCACAAAATCTTGCATTGTCAA

Fln Alignment:

sp_v1.1_unigene62801___SSQIKVAADYYLSFLEQLCGSNMAKPLDYVETMKLEIQRLQLNISAAERDRALLSVGRDPATIDPNRLLEPHYVAQLRRTAQNLALS
D5A916_______________STQIKGAAECYLSFLEQLCGSNMAKPLDYVETMKLEIERLQLNISAAERDRALLSVGRDPATIDPNGLLELRYVSQLRRTAQNLAFS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain