SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62738

Length: 402 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene62738
CCCTGTTTGAAACTGCAAGATGCTTCTCTGAGAGCTTGCAAGATCTGGAACATCTAAGATTGCTTTATGAGTCCACTCTTCGCCAGCAGAAGTTTCCAGGACCTGTTTGGAAGCCTCAAAAACTGAATTTTAGGGATATCCATGGAAACCTTCAATTTTTGAAGTCTAAGATTCTTAATATGAAGCAAAGGCTATCGAGTCCTTTTACAATTGATTATTACACTCTTATTGGTTTGAGAAGAGGTTGCACAAGGGCAGATGTCGAACGTGCACATCTTTTACTTTGCCTAAGGCATAGGCCTGATAAAGCTTCTCATTTTGTTGATCGCCGCGAGTTTGTGGATGAAAGAGATATTGACGCTGTTAAAGATCAGGCTCGTCTCTCGGCCTTGATGCTGTATA

Ace file of the UniGene sp_v1.1_unigene62738 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heat shock protein binding protein, putative	-	-	1.0e-39	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	58%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	6.36426e-40	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	6.36426e-40	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	6.36426e-40	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C448

Fln msg: Distance to subject end: 102 aas, your sequence is shorter than subject: 133 - 542

Fln protein: LFETARCFSESLQDLEHLRLLYESTLRQQKFPGPVWKPQKLNFRDIHGNLQFLKSKILNMKQRLSSPFTIDYYTLIGLRRGCTRADVERAHLLLCLRHRPDKASHFVDRREFVDERDIDAVKDQARLSALMLY

Protein Length: 134

Fln nts: CCCTGTTTGAAACTGCAAGATGCTTCTCTGAGAGCTTGCAAGATCTGGAACATCTAAGATTGCTTTATGAGTCCACTCTTCGCCAGCAGAAGTTTCCAGGACCTGTTTGGAAGCCTCAAAAACTGAATTTTAGGGATATCCATGGAAACCTTCAATTTTTGAAGTCTAAGATTCTTAATATGAAGCAAAGGCTATCGAGTCCTTTTACAATTGATTATTACACTCTTATTGGTTTGAGAAGAGGTTGCACAAGGGCAGATGTCGAACGTGCACATCTTTTACTTTGCCTAAGGCATAGGCCTGATAAAGCTTCTCATTTTGTTGATCGCCGCGAGTTTGTGGATGAAAGAGATATTGACGCTGTTAAAGATCAGGCTCGTCTCTCGGCCTTGATGCTGTATA

Fln Alignment:

sp_v1.1_unigene62738___LFETARCFSESLQDLEHLRLLYESTLRQQKFPGPVWKPQKLNFRDIHGNLQFLKSKILNMKQRLSSPFT--IDYYTLIGLRRGCTRADVERAHLLLCLRHRPDKASHFVDRREFVDERDIDAVKDQARLSALMLY
A5C448_______________LLESIRCLPDCLHDLEHLKLLYNSILRDRKLPGPAWKRHNVQYREIPGKLCALSTKIQELKQRVVSGETGNVDYYALIGLRRGCSRSELERAHLLLCLRHKPDKATNFVERCEFSDDRDLDSVKDRAKMSALLLY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
190		33		66	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain