SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62705

Length: 517 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene62705
TGATGCATGTTCTTCGTTGGAATCAAAAACTACTTCAGCTTGAGCAGGCAAAAATGGATCTCAAGAAGGTAACAGAAGAAGGATCTTCTTTGAGTGCTTCTATGGATTGTTTAAAAACAGAGCTAGATAAGAAAAAGACAGAATTGACTGAAATAAATGAGATCGAGGCAAAAGAAGAAACAAAAGCAGCAGATCTGAATGCAGAGCTTCATAAAGCCAGATCAAAATTGGCAGTTGCCATTACTACTGAAGAAAAGGCAAAGGATGCTGCTGCACATCTCTCTCAAGCTCTGCAACAGATTAATATAGAAACTGAGCAGGCTAGGAACGAAGCTGAATCTATGAATGAGGAAGCATGTAAAGCAAAATTGGAGACTGAACTGGCAAAGGCTGAGATGAATACCATAGATAATAGACTGCAATCTGCCTATAAGGATCTTGAGGAAGCTAAAGCTGCGGAAGCTACAGCCATGGAGCAAATTAAAGCTGTATCTGAAAAAGCTAGTGCTGCACGAGC

Ace file of the UniGene sp_v1.1_unigene62705 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF827 multi-domain protein	-	-	2.0e-32	37%
FL-Next	tr=Myosin heavy chain, putative, expressed; Oryza sativa subsp. japonica (Rice).	-	-	0.0	41%
Blast2go	protein	-	-	5.28715e-16	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.28715e-16	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF827, plant	IPR008545	-	5.28715e-16	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2QU66

Fln msg: Distance to subject end: 177 aas, your sequence is shorter than subject: 171 - 647

Fln protein: MHVLRWNQKLLQLEQAKMDLKKVTEEGSSLSASMDCLKTELDKKKTELTEINEIEAKEETKAADLNAELHKARSKLAVAITTEEKAKDAAAHLSQALQQINIETEQARNEAESMNEEACKAKLETELAKAEMNTIDNRLQSAYKDLEEAKAAEATAMEQIKAVSEKASAAR

Protein Length: 172

Fln nts: TGATGCATGTTCTTCGTTGGAATCAAAAACTACTTCAGCTTGAGCAGGCAAAAATGGATCTCAAGAAGGTAACAGAAGAAGGATCTTCTTTGAGTGCTTCTATGGATTGTTTAAAAACAGAGCTAGATAAGAAAAAGACAGAATTGACTGAAATAAATGAGATCGAGGCAAAAGAAGAAACAAAAGCAGCAGATCTGAATGCAGAGCTTCATAAAGCCAGATCAAAATTGGCAGTTGCCATTACTACTGAAGAAAAGGCAAAGGATGCTGCTGCACATCTCTCTCAAGCTCTGCAACAGATTAATATAGAAACTGAGCAGGCTAGGAACGAAGCTGAATCTATGAATGAGGAAGCATGTAAAGCAAAATTGGAGACTGAACTGGCAAAGGCTGAGATGAATACCATAGATAATAGACTGCAATCTGCCTATAAGGATCTTGAGGAAGCTAAAGCTGCGGAAGCTACAGCCATGGAGCAAATTAAAGCTGTATCTGAAAAAGCTAGTGCTGCACGAGC

Fln Alignment:

sp_v1.1_unigene62705___QLEQAKMDLKKVTEEGSSLSASMDCXXXXXXXXXXXXXEINEIEAKEETKAADLNAELHKARSKLAVAITTEEKAKDAAAHLSQALQQINIETEQARNEAESMNEEACKAKLETELAKAEMNTIDNRLQSAYKDLXXXXXXXXXXXEQIKAVSEKASAAR
Q2QU66_______________ELDDAKEMLQKVAEEESSLRSLVESLKQELEAVKEEHDQLKQKDTETESIVGDLHVKLQKCKSELEAAVAAESKATSASDDLMLALQQLSSESKNALQEAEVMQKSAADLRDEAEAARVALAEAEQKLQSALKEAEEAKSAEAKALDQIKQLSERASAAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain