SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62699

Length: 493 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene62699
ATGGGGGAAGGGGACCGAGTGTTATTTTAGATAAAAGTCAAGACATTTATGAAATCCAAATCTAAAACCAGCAAAAACCAAACTCAGTGTCGATCTCATCGATCAGAGTAGACCACAAGTATTTCTGGTGTGAATCACATCGGAGATGGCATTCGCAGGAACACAGCAGAAGTGCAAGGCATGCGAGAAGACGGTGTACGTGGTGGATCAGCTCACAGCCGATGGTTCAGTCTTTCACAAGGCCTGCTTCCGCTGCCATCATTGCAATGGCACCTTAAAGCTCAGCAACTATCCTTCTTTTGAAGGGGTGCTATACTGCAAACCTCACTTCGATCAGCTCTTTAAGAGGACTGGAAGTCTTGACAAAAGTTTTGAAGCTGTGAAAAATGAGAAGTTGAATGATGGTGAGGTACAGTATTACTCTATATCTCTTGGCAAGCTCTCAACCTGCAATAACTTATGATCATATTAAGACACCCAACAGGGTCTCTGC

Ace file of the UniGene sp_v1.1_unigene62699

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LIM domain protein WLIM1 n=2 Tax=Helianthus annuus RepID=Q9SP33_HELAN	-	-	1.0e-36	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	pollen-specific protein	-	-	7.00649e-45	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, LIM-type	IPR001781	-	7.00649e-45	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNM5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 67 aas, your sequence is shorter than subject: 106 - 187

Fln protein: MAFAGTQQKCKACEKTVYVVDQLTADGSVFHKACFRCHHCNGTLKLSNYPSFEGVLYCKPHFDQLFKRTGSLDKSFEAVKNEKLNDGEVQYYSISLGKLSTCNNL*

Protein Length: 107

Fln nts: ATGGGGGAAGGGGACCGAGTGTTATTTTAGATAAAAGTCAAGACATTTATGAAATCCAAATCTAAAACCAGCAAAAACCAAACTCAGTGTCGATCTCATCGATCAGAGTAGACCACAAGTATTTCTGGTGTGAATCACATCGGAG_-_ATGGCATTCGCAGGAACACAGCAGAAGTGCAAGGCATGCGAGAAGACGGTGTACGTGGTGGATCAGCTCACAGCCGATGGTTCAGTCTTTCACAAGGCCTGCTTCCGCTGCCATCATTGCAATGGCACCTTAAAGCTCAGCAACTATCCTTCTTTTGAAGGGGTGCTATACTGCAAACCTCACTTCGATCAGCTCTTTAAGAGGACTGGAAGTCTTGACAAAAGTTTTGAAGCTGTGAAAAATGAGAAGTTGAATGATGGTGAGGTACAGTATTACTCTATATCTCTTGGCAAGCTCTCAACCTGCAATAACTTATGATCATATTAAGACACCCAACAGGGTCTCTGC

Fln Alignment:

sp_v1.1_unigene62699___MAFAGTQQKCKACEKTVYVVDQLTADGSVFHKACFRCHHCNGTLKLSNYPSFEGVLYCKPHFDQLFKRTGSLDKSFE----AVKNEKLNDGEVQ
A9NNM5_______________MAFAGTQQKCKACEKTVYVVDQLTADGSVFHKACFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKAVKNEKLNDGEIK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
150		66	33		0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain