SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62651

Length: 384 nt

UniGene Fasta

>sp_v1.1_unigene62651
GGAATGGCAAATCAAAGGTCGTTAAAGTATCTGAACCCGAAATTTTGCTTCGAATTGAGGACATTGCCAGAGCTTTCAAGTCTTGTACATCTTGAATTTCTCAACATAGATGGGTGTGTCAAACTGGAAACCCCAAATCTTGAATGTCTGAGAATACTTAATGGATCAAACCGGAGGCGTCTTGGATGCTCAAGATTTTAGATGTTTGTGGCAGAAGTCATGGAGCTTGTAGAGCTCACACCTCTAAGAGATGCTATTGTAGGGCTTCCTAGAGTGACAGGTCTTTCTACAGAGCAAAGGAATAGACTTAGCATAGCAGTGGAACTAGTTGCCAGTCCTTCTATAATCTTCATGGATGAGTCAAATTCAAGACTAGATGCCCAT

Ace file of the UniGene sp_v1.1_unigene62651

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC; ABC transporter-like	-	-	1.0e-18	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	atp-binding cassette transporter	-	-	2.33294e-18	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC transporter-like	IPR003439	-	2.33294e-18	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPF4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 112 aas, your sequence is shorter than subject: 128 - 283

Fln protein: GMANQRSLKYLNPKFCFELRTLPELSSLVHLEFLNIDGCVKLETPNLECLRILNGSNRRRLGCSRF*MFVAEVMELVELTPLRDAIVGLPRVTGLSTEQRNRLSIAVELVASPSIIFMDESNSRLDAH

Protein Length: 129

Fln nts: GGAATGGCAAATCAAAGGTCGTTAAAGTATCTGAACCCGAAATTTTGCTTCGAATTGAGGACATTGCCAGAGCTTTCAAGTCTTGTACATCTTGAATTTCTCAACATAGATGGGTGTGTCAAACTGGAAACCCCAAATCTTGAATGTCTGAGAATACTTAATGGATCAAACCGGAGGCGTCTTGGATGCTCAAGATTTTAGATGTTTGTGGCAGAAGTCATGGAGCTTGTAGAGCTCACACCTCTAAGAGATGCTATTGTAGGGCTTCCTAGAGTGACAGGTCTTTCTACAGAGCAAAGGAATAGACTTAGCATAGCAGTGGAACTAGTTGCCAGTCCTTCTATAATCTTCATGGATGAGTCAAATTCAAGACTAGATGCCCAT

Fln Alignment:

sp_v1.1_unigene62651___FVAEVMELVELTPLRDAIVGLPRVTGLSTEQRNRLSIAVELVASPSIIFMDESNSRLDA
B8LPF4_______________FVSEVMQLLELDDLKDVVVGIPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain