SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62611

Length: 484 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene62611
CGTCGTGACCTTGGCTGTCACTCAAATCCGGGAAGTGTGGTGCTCTTGTTTTAGAGGCCACCAATGGCTGCTTTAAGGGCAGTTTGTCGTCCCTTCTTGGTTTCCTCATTCATTTCTTGCAGCTGGCGAACGTTTTTCAATTATGGGCGTACTACCAATTTCAGGTCTAATTATGTGTTTCCCAGGGGGTATCTGAACAGTACAGGGATTGATTTGGGTCCTCGTTCAAATGGTAGGAGAGTGTATGGTAGGAGAATGTTTACTAGGGCCTCCGCCTGGAAGTCTGAGCGATCTCCCTATGAATCTCTGGTTTATGATGGCAGTGGGGATTTAGAGGAAGGAGAAACAGCAGAAGCACGATTCATTGAAATTCAAGCTGCTTATGAGTTGCTTATGGATAAGGTGGAGCGTAAGCAGTATGATATGGACAACCGTGTAAATCCTATGAAGGCATCTAAGGCATGGATGGAGTGGTTGATGAAAG

Ace file of the UniGene sp_v1.1_unigene62611

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNAJ heat shock N-terminal domain-containing protein	-	-	3.0e-28	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	1.69418e-32	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	1.69418e-32	65%
Blast2go	Heat shock protein DnaJ, conserved site	IPR018253	-	1.69418e-32	65%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1F1

Fln msg: STOP codon was not found. Distance to subject end: 47 aas, atg_distance in limit (1-15): atg_distance = 14, Unexpected STOP codon in 5 prime region,

Fln protein: RPPMAALRAVCRPFLVSSFISCSWRTFFNYGRTTNFRSNYVFPRGYLNSTGIDLGPRSNGRRVYGRRMFTRASAWKSERSPYESLVYDGSGDLEEGETAEARFIEIQAAYELLMDKVERKQYDMDNRVNPMKASKAWMEWLMK

Protein Length: 144

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATCCGGGAAGTGTGGTGCTCTTGTTTTAGAGGCCACCAATGGCTGCTTTAAGGGCAGTTTGTCGTCCCTTCTTGGTTTCCTCATTCATTTCTTGCAGCTGGCGAACGTTTTTCAATTATGGGCGTACTACCAATTTCAGGTCTAATTATGTGTTTCCCAGGGGGTATCTGAACAGTACAGGGATTGATTTGGGTCCTCGTTCAAATGGTAGGAGAGTGTATGGTAGGAGAATGTTTACTAGGGCCTCCGCCTGGAAGTCTGAGCGATCTCCCTATGAATCTCTGGTTTATGATGGCAGTGGGGATTTAGAGGAAGGAGAAACAGCAGAAGCACGATTCATTGAAATTCAAGCTGCTTATGAGTTGCTTATGGATAAGGTGGAGCGTAAGCAGTATGATATGGACAACCGTGTAAATCCTATGAAGGCATCTAAGGCATGGATGGAGTGGTTGATGAAAG

Fln Alignment:

sp_v1.1_unigene62611___NPGSVVLLF*RPPMAALRAVCRPFLVSSFISCSWRTFFNYGRTTNFRSNYVFPRGYLNSTGIDLGPRSNGRRVYGRRMFTRASAWKSERSPYESL
A9P1F1_______________NLGSVVLSFQRPPMAALRAVCRPHLVSSFISCSRRTPFNYGRPPNCRSNYVFPRGYLNSTGIELGFRSN-----GRRMFTRASARKSERTPYESL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
134		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain