SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62570

Length: 397 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene62570
AATCCAATATGTTAAATATGAGTCTAACTTATTTTGTTTGTGTGTTTTATTAGGTTAATGCAAGTGGGCAATTTTGTGGTGTAGCAGAGATGACAGGGCCTGTAGACTTCAATCAGAGTGTAGACTATTGGCAGCAAGATAAGTGGAGTGGTCGATTCCCAGTGAAATGGCATATTGTAAAGGATGTTCCTAACAATCAACTACGCCACATTATTTTGGAAAATAATGACAATAAGCCAGTGACAAACAGTAGGGATACTCAGGAGGTAAGTTGATTGATTGCATCCGAAACTCCCACTTGAAATGCTTCTTCTCTAATGTAATGGTTATATTACTTTCAGGTAATTTACGTTGTTGTATTCGCAGGTAATGTTAGATAAAGGTGTAGAAATGTTGA

Ace file of the UniGene sp_v1.1_unigene62570 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	yth domain-containing protein, putative	-	-	1.0e-33	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	yth domain-containing	-	-	1.80824e-34	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	YTH domain	IPR007275	-	1.80824e-34	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A886

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 91 aas, your sequence is shorter than subject: 91 - 667

Fln protein: SNMLNMSLTYFVCVFY*VNASGQFCGVAEMTGPVDFNQSVDYWQQDKWSGRFPVKWHIVKDVPNNQLRHIILENNDNKPVTNSRDTQEVS*

Protein Length: 92

Fln nts: AATCCAATATGTTAAATATGAGTCTAACTTATTTTGTTTGTGTGTTTTATTAGGTTAATGCAAGTGGGCAATTTTGTGGTGTAGCAGAGATGACAGGGCCTGTAGACTTCAATCAGAGTGTAGACTATTGGCAGCAAGATAAGTGGAGTGGTCGATTCCCAGTGAAATGGCATATTGTAAAGGATGTTCCTAACAATCAACTACGCCACATTATTTTGGAAAATAATGACAATAAGCCAGTGACAAACAGTAGGGATACTCAGGAGGTAAGTTGATTGATTGCATCCGAAACTCCCACTTGAAATGCTTCTTCTCTAATGTAATGGTTATATTACTTTCAGGTAATTTACGTTGTTGTATTCGCAGGTAATGTTAGATAAAGGTGTAGAAATGTTGA

Fln Alignment:

sp_v1.1_unigene62570___VCVFY*VNASGQFCGVAEMTGPVDFNQSVDYWQQDKWSGRFPVKWHIVKDVPNNQLRHIILENNDNKPVTNSRDTQEV
D5A886_______________VFLFFSVNASGQFCGVAEMVSSVDFHTSMNFWQQDKWNGFFPVKWHIIKDVPNSQFRHIILENNDHKPVTNSRDTQEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain