SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62553

Length: 377 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene62553
AAAAAGAGCAGGGCAGAAATGGCCGCCCATCCGGGATAACGGTCTTGAATTTCATTTGGCTTCATTTGAAGTTTATTCGGAGTGCATGTAAGCTCTATATATAGGATTACACCTCCTACTCCCTTTGCAGAACAGGATTTCCTAAACATGTATTTCAAGAAGATGTACAAGCCCATTCCTCTCGTTTACAACTTGGTTCTAGCAATGCTATGGCGACACCCAGAAAATGTCGATCTGGAAAAAGTTAAAGTCGTCCACTATTGCGCAGCTGGATCCAAACCCTGGAGATACACGGGTAAGGAGGAGAACATGCAGAGGGAAGACATAAAAGTATTAGTTAAGAAATGGTGGGATAGGGGGTATATAACGACGAGTCT

Ace file of the UniGene sp_v1.1_unigene62553

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Galactinol synthase n=2 Tax=Arabidopsis RepID=O22893_ARATH	-	-	4.99983e-42	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	galactinol synthase	-	-	2.34437e-42	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to high light intensity	GO:0009644	Biological Process	2.34437e-42	96%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	2.34437e-42	96%
Blast2go	response to heat	GO:0009408	Biological Process	2.34437e-42	96%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	2.34437e-42	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 8	IPR002495	-	2.34437e-42	96%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQA5

Fln msg: Distance to subject end: 41 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 102 - 151

Fln protein: SLFGVHVSSIYRITPPTPFAEQDFLNMYFKKMYKPIPLVYNLVLAMLWRHPENVDLEKVKVVHYCAAGSKPWRYTGKEENMQREDIKVLVKKWWDRGYITTS

Protein Length: 103

Fln nts: AAAAAGAGCAGGGCAGAAATGGCCGCCCATCCGGGATAACGGTCTTGAATTTCATTTGGCTTCATTTGAAGTTTATTCGGAGTGCATGTAAGCTCTATATATAGGATTACACCTCCTACTCCCTTTGCAGAACAGGATTTCCTAAACATGTATTTCAAGAAGATGTACAAGCCCATTCCTCTCGTTTACAACTTGGTTCTAGCAATGCTATGGCGACACCCAGAAAATGTCGATCTGGAAAAAGTTAAAGTCGTCCACTATTGCGCAGCTGGATCCAAACCCTGGAGATACACGGGTAAGGAGGAGAACATGCAGAGGGAAGACATAAAAGTATTAGTTAAGAAATGGTGGGATAGGGGGTATATAACGACGAGTCT

Fln Alignment:

sp_v1.1_unigene62553___RITPPTPFAEQDFLNMYFKKMYKPIPLVYNLVLAMLWRHPENVDLEKVKVVHYCAAGSKPWRYTGKEENMQREDIKVLVKKWWD
C0PQA5_______________RITAPTPFAEQDFLNMYFQKMYKPIPLVYNLVLAMLWRHPENVDLDKVKVVHYCAAGSKPWRYTGKEANMQREDIKVLVQKWWD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain