SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62551

Length: 293 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene62551
TGGTTGTGGTGAAGAAGGTGACAGCAGAGGGGTGGAGGAAGATGAGGTGGACGCCAGGAAAGAGCACCAGAAGAAGAGCTCAGCTTCCTCTGTTACATTGGAACCTTCGTTTGATGCACTTAATGTAAAGAAGTTTGATGTTGCCTTCACAGTAGACCCTTTGTATCATCAGACCTCAGCACAATTTGATGAGGGAGGAGCTAAGGGCCTTCTCCTTAATACCCTTAGTGTATATGATGATTGCCGGATCGTTTTTGACTCTTGGGATGTGCCGGGAAAGAGTATGAAGTCAA

Ace file of the UniGene sp_v1.1_unigene62551

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Condensin complex subunit 2 n=1 Tax=Arabidopsis thaliana RepID=Q564K3_ARATH	-	-	3.0e-27	64%
FL-Next	sp=Condensin complex subunit 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Blast2go	chromosome condensation complex subunit h	-	-	6.21281e-27	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Condensin complex subunit 2/barren	IPR022816	-	6.21281e-27	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q564K3

Fln msg: Distance to subject end: 416 aas, your sequence is shorter than subject: 97 - 671

Fln protein: GCGEEGDSRGVEEDEVDARKEHQKKSSASSVTLEPSFDALNVKKFDVAFTVDPLYHQTSAQFDEGGAKGLLLNTLSVYDDCRIVFDSWDVPGKSMKS

Protein Length: 98

Fln nts: TGGTTGTGGTGAAGAAGGTGACAGCAGAGGGGTGGAGGAAGATGAGGTGGACGCCAGGAAAGAGCACCAGAAGAAGAGCTCAGCTTCCTCTGTTACATTGGAACCTTCGTTTGATGCACTTAATGTAAAGAAGTTTGATGTTGCCTTCACAGTAGACCCTTTGTATCATCAGACCTCAGCACAATTTGATGAGGGAGGAGCTAAGGGCCTTCTCCTTAATACCCTTAGTGTATATGATGATTGCCGGATCGTTTTTGACTCTTGGGATGTGCCGGGAAAGAGTATGAAGTCAA

Fln Alignment:

sp_v1.1_unigene62551___GEEGDSRGVEEDEVDARKEHQKKSSASSVTLEPSFDALNVKKFDVAFTVDPLYHQTSAQFDEGGAKGLLLNTLSVYDDCRIVFDSWDVPGKSMKS
Q564K3_______________GDHEDAAGAVENATNQKKQPEKKISPLS-TLEPSFDALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLGVYGGCQVLFDSQEIPGKLVSS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain