SustainPineDB

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Assembly info
Unigenes
SNPs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62471

Length: 358 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene62471
GAATTCAAGTAGAAGCTCCAGTATTCAACGTCGTGACCTTGGCTGTCACTCAACCCTTGGGATCTTTTATTTACACATCCCAATATTTCAGGTCTCTTTCATTGTTGGACCGTCTCTCAGCTTTCCCACTTGTCAAAGCACTTGTAGAATATGATGTGGATGAGAATGCTTACATGTCATATGACCTAATGACTGCAAGACAACTTCTTCGTGAGGGAGGCATATCAAGACAACTTTATTGTGACTTTTTGGAGCCATTTCTTTTGGTTACTTTATTTGCTCCTCCAGAACACCTCTCAGCTGCGGCAGCTTTGGGAACTTTATATTATTATGCATTAGGCCACCAACAAGATTTTGA

Ace file of the UniGene sp_v1.1_unigene62471

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	amine oxidase	-	-	2.0e-17	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	amine oxidase	-	-	6.55576e-29	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LS23

Fln msg: Distance to subject end: 292 aas, your sequence is shorter than subject: 118 - 574

Fln protein: IQVEAPVFNVVTLAVTQPLGSFIYTSQYFRSLSLLDRLSAFPLVKALVEYDVDENAYMSYDLMTARQLLREGGISRQLYCDFLEPFLLVTLFAPPEHLSAAAALGTLYYYALGHQQDF

Protein Length: 119

Fln nts: GAATTCAAGTAGAAGCTCCAGTATTCAACGTCGTGACCTTGGCTGTCACTCAACCCTTGGGATCTTTTATTTACACATCCCAATATTTCAGGTCTCTTTCATTGTTGGACCGTCTCTCAGCTTTCCCACTTGTCAAAGCACTTGTAGAATATGATGTGGATGAGAATGCTTACATGTCATATGACCTAATGACTGCAAGACAACTTCTTCGTGAGGGAGGCATATCAAGACAACTTTATTGTGACTTTTTGGAGCCATTTCTTTTGGTTACTTTATTTGCTCCTCCAGAACACCTCTCAGCTGCGGCAGCTTTGGGAACTTTATATTATTATGCATTAGGCCACCAACAAGATTTTGA

Fln Alignment:

sp_v1.1_unigene62471___IQVEAPVFNVVTLAVTQPLGSFIYTSQYFRSLSLLDRLSAFPLVKALVEYDVDENAYMSYDLMTARQLLREGGISRQLYCDFLEPFLLVTLFAPPEHLSXXXXXXXXXXXXXXHQQDF
B8LS23_______________LEVESPIFQDLP-RLPSPLGTFIYTQ--FQRLPLADRLTSLPLMYAVIDFDNTDNAWKKYDKLTARELFRQFGCSERVYQDAFNPMLLVGLFAPGEQCSAAASLGMLYYFILGHQQDF

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
29		66		33	0.997471
31	33			66	0.997471
32	33	66			0.997471
33			66	33	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain