SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62460

Length: 417 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene62460
CGTCGTGACCTTGGCTGTCACTCAGTTTCTTTGAAAGATGAACTTAATCCATTATCATCCTTAGTGAGTCGTTGGAGGAAGATTGAATTTGAATGCTGGCCTACTTTGCTGGATGCAGTTGAGCGACAACACAAGGTTGATGCTGAGAAGTTGTGGTTTGCCTTACACTCAATACTATTTCGGAGAATGCCTGTTGATCCAGATGTGGAAATCAACTCTACAATTTTGAGTATCGAAGAGTTTATGCAAACTGCGACCATAGGAGAGTTTGGGAAACGCTTGGAGCTCTTGCTTATGTTTCATGGGCAGTTTTCTTTACAAATCTGCTTGGAATCATACCCTATAGATATGCCAAAAACCCTTGCTATAAAACTTTCACAAATTACATACAACATCTTTGGGTATTATGTGCAGTTC

Ace file of the UniGene sp_v1.1_unigene62460 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to midasin-related n=1 Tax=Vitis vinifera RepID=UPI00019863A5	-	-	6.0e-23	52%
FL-Next	sp=Midasin; Oryza sativa subsp. indica (Rice).	-	-	0.0	44%
Blast2go	low quality protein: midasin-like	-	-	1.21994e-22	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B8BH91

Fln msg: Distance to subject end: 1479 aas, your sequence is shorter than subject: 139 - 5024

Fln protein: RRDLGCHSVSLKDELNPLSSLVSRWRKIEFECWPTLLDAVERQHKVDAEKLWFALHSILFRRMPVDPDVEINSTILSIEEFMQTATIGEFGKRLELLLMFHGQFSLQICLESYPIDMPKTLAIKLSQITYNIFGYYVQF

Protein Length: 140

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTCTTTGAAAGATGAACTTAATCCATTATCATCCTTAGTGAGTCGTTGGAGGAAGATTGAATTTGAATGCTGGCCTACTTTGCTGGATGCAGTTGAGCGACAACACAAGGTTGATGCTGAGAAGTTGTGGTTTGCCTTACACTCAATACTATTTCGGAGAATGCCTGTTGATCCAGATGTGGAAATCAACTCTACAATTTTGAGTATCGAAGAGTTTATGCAAACTGCGACCATAGGAGAGTTTGGGAAACGCTTGGAGCTCTTGCTTATGTTTCATGGGCAGTTTTCTTTACAAATCTGCTTGGAATCATACCCTATAGATATGCCAAAAACCCTTGCTATAAAACTTTCACAAATTACATACAACATCTTTGGGTATTATGTGCAGTTC

Fln Alignment:

sp_v1.1_unigene62460___LKDELNPLSSLVSRWRKIEFECWPTLLDAVERQHKVDAEKLWFALHSILFRRMPVDPDVEINSTILSIEEFMQTATIGEFGKRLELLLMFHGQFSLQICLESYPIDMPKTLAIKLSQITYNIFGYYVQF
B8BH91_______________LKDHLPQLFIIVSSWQRLELECWPILLQEVLEKYESNALKLWFPLRALLTQSCDISKNEEI-SIIKSVEEFVQTSSIGEFKRRLHLLLAFHGELSDGAGVGAYSSNSLK----KIQNILYNMFGYYMQF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain