SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62440

Length: 502 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene62440
AAAGCTTTAAAGTTTCTGTATCTCAAGAAAAGAGATGGCTTCGACCTCGTCGAACTCACCCTGCGCTGCCTGCAAATTCCTAAGAAGAAAATGTACTTCAGAGTGTGTGTTTGCGCCATATTTCCCTCCGGAAGAACCTCAGAAATTTGCCAATGTTCACAAGATCTTCGGAGCCAGCAATGTGACTAAAATTCTCAACGACTTAGCGCCTCACCAGCGAGAGGACGCGGTGAATTCTCTGGCGTACGAAGCGGAAGCCCGTTTGAAAGGCCCCGTTTATGGGTGCGTTGGAGCGATCTCCGTTCTGCAGAGACAGGTGCAACAGCTGCAGAAGGAACTGGCGGCCGCCCACGCGGATCTCCTCCAATACAACACCGCAGCGGAAGCCGTTCTTTTTCCGCATAGTCCAGGCTCCACGCTGCCAGCTTATTCCAGGCTTCAGATGATTCATGCCGCGGGCTAGAGAACAACAGCAGCAAAATTTAGTGGATTTCCCTAATTC

Ace file of the UniGene sp_v1.1_unigene62440

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF260 domain containing protein	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lateral organ boundaries, LOB	IPR004883	-	0.0	88%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2E3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 19 aas, your sequence is shorter than subject: 143 - 179

Fln protein: MASTSSNSPCAACKFLRRKCTSECVFAPYFPPEEPQKFANVHKIFGASNVTKILNDLAPHQREDAVNSLAYEAEARLKGPVYGCVGAISVLQRQVQQLQKELAAAHADLLQYNTAAEAVLFPHSPGSTLPAYSRLQMIHAAG*

Protein Length: 144

Fln nts: AAAGCTTTAAAGTTTCTGTATCTCAAGAAAAGAG_-_ATGGCTTCGACCTCGTCGAACTCACCCTGCGCTGCCTGCAAATTCCTAAGAAGAAAATGTACTTCAGAGTGTGTGTTTGCGCCATATTTCCCTCCGGAAGAACCTCAGAAATTTGCCAATGTTCACAAGATCTTCGGAGCCAGCAATGTGACTAAAATTCTCAACGACTTAGCGCCTCACCAGCGAGAGGACGCGGTGAATTCTCTGGCGTACGAAGCGGAAGCCCGTTTGAAAGGCCCCGTTTATGGGTGCGTTGGAGCGATCTCCGTTCTGCAGAGACAGGTGCAACAGCTGCAGAAGGAACTGGCGGCCGCCCACGCGGATCTCCTCCAATACAACACCGCAGCGGAAGCCGTTCTTTTTCCGCATAGTCCAGGCTCCACGCTGCCAGCTTATTCCAGGCTTCAGATGATTCATGCCGCGGGCTAGAGAACAACAGCAGCAAAATTTAGTGGATTTCCCTAATTC

Fln Alignment:

sp_v1.1_unigene62440___SSNSPCAACKFLRRKCTSECVFAPYFPPEEPQKFANVHKIFGASNVTKILNDLAPHQREDAVNSLAYEAEARLKGPVYGCVGAISVLQRQVQQLQKELAAAHADLLQY
A9P2E3_______________NTSTPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKIFGASNVSKMLMEVPESQRSDTANSLVYEANARLRDPVYGSMGVISTLQHQIQSLQSELNVVRAELVRY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain