SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62430

Length: 375 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene62430
ATGGGGTGCCAACCCTGGAACATTATGCTTGCATGATTGACCTTCTTGGCCGTGCTGGATACCTGGATGAGGCAAAGCAGTTTATTGACAAAATGCCATTTGAAGCTGATGTTGTTATTTGGCGGTCTTTGCTCAGTGCCTGCAGACAACATGGTAATGTGGAGCTAGGAGAACATTCAGCAGGACAAATTTTAAAGCTAGAACCAGACGATGCTGCAGGATATGTGCTGCTGTCAAACATTTACGCTGCAGCTGGCCAATGGGATGACGTAGACGAAGGTGAGAAAAATGATGAAGCAGAAAGGAGTGAGAAAAGAGCCAGGATGCAGCTGGATTGAGGTCAAGAACAAGGTGCATACTTTCATTGTGAGAGAT

Ace file of the UniGene sp_v1.1_unigene62430

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein, putative	-	-	4.0e-34	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	pentatricopeptide repeat-containing	-	-	3.11465e-38	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	3.11465e-38	76%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	3.11465e-38	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Overlapping hits, possible frame ERROR between 287 and 277, Distance to subject end: 116 aas, atg_distance in limit (1-15): atg_distance = 7, your sequence is shorter than subject: 115 - 246

Fln protein: MIDLLGRAGYLDEAKQFIDKMPFEADVVIWRSLLSACRQHGNVELGEHSAGQILKLEPDDAAGYVLLSNIYAAAGQWDDVDxxxxxMMKQKGVRKEPGCSWIEVKNKVHTFIVRD

Protein Length: 116

Fln nts: ATGGGGTGCCAACCCTGGAACATTATGCTTGC_-_ATGATTGACCTTCTTGGCCGTGCTGGATACCTGGATGAGGCAAAGCAGTTTATTGACAAAATGCCATTTGAAGCTGATGTTGTTATTTGGCGGTCTTTGCTCAGTGCCTGCAGACAACATGGTAATGTGGAGCTAGGAGAACATTCAGCAGGACAAATTTTAAAGCTAGAACCAGACGATGCTGCAGGATATGTGCTGCTGTCAAACATTTACGCTGCAGCTGGCCAATGGGATGACGTAGACxxxxxxxxxxxxxxxATGATGAAGCAGAAAGGAGTGAGAAAAGAGCCAGGATGCAGCTGGATTGAGGTCAAGAACAAGGTGCATACTTTCATTGTGAGAGAT

Fln Alignment:

sp_v1.1_unigene62430___PTLEHYACMIDLLGRAGYLDEAKQFIDKMPFEADVVIWRSLLSACRQHGNVELGEHSAGQILKLEPDDAAGYVLLSNIYAAAGQWDDVDxxxxMMKQKGVRKEPGCSWIEVKNKVHTFIVRD
D5AAE0_______________PREVHYACMIDLLGRAGRLDEARDFMKTIPFAPDANVWGALLGACRMYGNIDLGKHAAECLFQLEPHNAAKYVLLSNIYAAAGRWDDVAxxxxIMKDRGVQKQPGCSWIEVKNKVHTFMVED

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain