SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62417

Length: 441 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene62417
GTTCCAATTGATACGGATCAAGAGCCATACTCCGCTGGGAATGCAAATGGATTTGTTAAGGGGATTCTAGAGCACGTATGTGTCAAGCCATGGGTCACCTCTCATACAGAGATGGCCAAATACAACAAGAACTTTCAAGTTTATACAATGACCTTCCTTGGTGCTCAAGGCATGTTGGGAATGATGTGATTGGTATTGATTTGGGTACTCCCAACTCATGTGTGGCAATCATGGAAGGGAAGAACCCAAAAGTAATTGAGAACTGGGAAGGGGCCAAGAGTCCAGGACAACACCATCTATTGTAGATGTGAATCAAAAGGGAGAGATACATCCATAATGTATATGTAAAACGGTTCAAATTGGCTTTAGACTGCTTCTTCTCTGTTTGGTTTGTTGTTGGGAACGTGTGGATATTTGGTGGTCACTCATCCCCAAGTGATG

Ace file of the UniGene sp_v1.1_unigene62417 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chaperone DnaK n=1 Tax=Medicago truncatula RepID=A2Q199_MEDTR	-	-	2.0e-12	73%
FL-Next	sp=Heat shock 70 kDa protein, mitochondrial; Phaseolus vulgaris (Kidney bean) (French bean).	-	-	0.0	76%
Blast2go	Chaperone DnaK [Medicago truncatula]	-	-	3.71996e-12	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein Hsp70	IPR001023	-	3.71996e-12	83%
Blast2go	Heat shock protein 70	IPR013126	-	3.71996e-12	83%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q01899

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 538 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 76 - 675

Fln protein: MCQAMGHLSYRDGQIQQELSSLYNDLPWCSRHVGNDVIGIDLGTPNSCVAIMEGKNPKVIENWEGAKSPGQHHLL*

Protein Length: 77

Fln nts: GTTCCAATTGATACGGATCAAGAGCCATACTCCGCTGGGAATGCAAATGGATTTGTTAAGGGGATTCTAGAGCACGT_-_ATGTGTCAAGCCATGGGTCACCTCTCATACAGAGATGGCCAAATACAACAAGAACTTTCAAGTTTATACAATGACCTTCCTTGGTGCTCAAGGCATGTTGGGAATGATGTGATTGGTATTGATTTGGGTACTCCCAACTCATGTGTGGCAATCATGGAAGGGAAGAACCCAAAAGTAATTGAGAACTGGGAAGGGGCCAAGAGTCCAGGACAACACCATCTATTGTAGATGTGAATCAAAAGGGAGAGATACATCCATAATGTATATGTAAAACGGTTCAAATTGGCTTTAGACTGCTTCTTCTCTGTTTGGTTTGTTGTTGGGAACGTGTGGATATTTGGTGGTCACTCATCCCCAAGTGATG

Fln Alignment:

sp_v1.1_unigene62417___PWCSRHVGNDVIGIDLGTPNSCVAIMEGKNPKVIENWEGAKS
Q01899_______________PFSSRPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGART

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain