SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62396

Length: 252 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene62396
CGTCGTGACCTTGGCTGTCACTCATTTGGGTTTTGCTTGCCTGCTGCATTTTTTATTGGCTTTTGTGATCACTGCATCGTCTCTGTCCCTGGATGGGAGGGCTCTGCTCGAGTTGAAGAAATCGATAAGCCAGGATCCTATTGGCGTTCTTTCTGATTGGAGTGAAAATGACGACTACCCTTGCTCATGGAGTGGGGTTACATGTGATGGCTTGAGAAGAGTTGTGGGCCTCAACATTAGCGGTAGCTTGGA

Ace file of the UniGene sp_v1.1_unigene62396

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine Rich Repeat family protein [Oryza sativa (japonica cultivar-group)]	-	-	2.0e-09	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	predicted protein [Physcomitrella patens subsp. patens]	-	-	8.23078e-11	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	8.23078e-11	63%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLZ2

Fln msg: Distance to subject end: 437 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 83 - 514

Fln protein: VVTLAVTHLGFACLLHFLLAFVITASSLSLDGRALLELKKSISQDPIGVLSDWSENDDYPCSWSGVTCDGLRRVVGLNISGSL

Protein Length: 84

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGGGTTTTGCTTGCCTGCTGCATTTTTTATTGGCTTTTGTGATCACTGCATCGTCTCTGTCCCTGGATGGGAGGGCTCTGCTCGAGTTGAAGAAATCGATAAGCCAGGATCCTATTGGCGTTCTTTCTGATTGGAGTGAAAATGACGACTACCCTTGCTCATGGAGTGGGGTTACATGTGATGGCTTGAGAAGAGTTGTGGGCCTCAACATTAGCGGTAGCTTGGA

Fln Alignment:

sp_v1.1_unigene62396___SSLSLDGRALLELKKSISQDPIGVLSDWSENDDYPCSWSGVTC
B8LLZ2_______________SSISDEGLALLAFKDAIYDDPNAVLSNWNALDEQPCNWSGINC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain