SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62366

Length: 328 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene62366
GCCCTCTTCGTCAAGACCTTGGCCGTCACCCATTCAGTGCCGATTGGAGCTCAGGCATTCAACTGCTCGCTGTGGCTGCGAAAAATAGCAGGGTCATAAAAATATTATGGCCGGAGGAATAATGGAGGATTTGGAGGCATTCAGGAAGGCTCAGAGAGCAGATGGCCCCGCACGATCCTCGCTATCGGTACTGCCACTCCTCCCAATGCGGTCGATCAGAGCAGTTATCCTGATTACTACTTCAAAATCACCGACAGCGAGCATATGACAGAACTCAAGGAGAAATTCAAGCGAATGTGCGACAAGTCCGCAATAAAGACGAGATACA

Ace file of the UniGene sp_v1.1_unigene62366 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chalcone synthase n=47 Tax=Pinaceae RepID=CHSY_PINSY	-	-	2.0e-28	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	chalcone synthase	-	-	7.92695e-29	95%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXH9

Fln msg: Overlapping hits, possible frame ERROR between 172 and 166, Distance to subject end: 321 aas, your sequence is shorter than subject: 74 - 395

Fln protein: MAGGIMEDLEAFRKAQRADxxxxILAIGTATPPNAVDQSSYPDYYFKITDSEHMTELKEKFKRMCDKSAIKTRY

Protein Length: 75

Fln nts: GCCCTCTTCGTCAAGACCTTGGCCGTCACCCATTCAGTGCCGATTGGAGCTCAGGCATTCAACTGCTCGCTGTGGCTGCGAAAAATAGCAGGGTCATAAAAATATT_-_ATGGCCGGAGGAATAATGGAGGATTTGGAGGCATTCAGGAAGGCTCAGAGAGCAGATxxxxxxxxxxxxATCCTCGCTATCGGTACTGCCACTCCTCCCAATGCGGTCGATCAGAGCAGTTATCCTGATTACTACTTCAAAATCACCGACAGCGAGCATATGACAGAACTCAAGGAGAAATTCAAGCGAATGTGCGACAAGTCCGCAATAAAGACGAGATACA

Fln Alignment:

sp_v1.1_unigene62366___MAGGIMEDLEAFRKAQRADGxxTILAIGTATPPNAVDQSSYPDYYFKITDSEHMTELKEKFKRMCDKSAIKTRY
A9NXH9_______________MAGGIMEDLEAFRKAQRADGxxTILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFRRMCDKSAINKRY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain