SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62270

Length: 521 nt

UniGene Fasta

>sp_v1.1_unigene62270
CGTCGTGACCTTGGCTGTCACTCATTCTTTGGAAACTATAAACCCCGTTCCGATTTGCCAGGCCTTGTAGAATTGTATTTGGATAAAAAGCTTGAACTGGATAAATTTATTACACACGAGGTTTCATTTGCCAATATCAACGAGGCATTTGATTACATGATTAATGGCTAGAGTCTGAGATGCGTGATAAACTTGACTGGTAATTAAACATTTGAGAGGAAGTCAATAGTTCACAATCCCATTATTGTGGAGACGTTTCACAATGTTCACAATACCATAAGAACTCTATCATGTCTTTCCTTACAAGCATCCGCATTCTCTATGGCCCTCGACAGGATTGTGGCCACCACTTCCATTAACTACTGAACCTTCGCTTTGTTTAAGAACCCAACGGTTTAGGTACGTGGAGTGCTTACGGGCCTTGCATTTCTGAGTGAAGTTTAATGCTGCAAATTGTTTTGCATTACAATGTAATAGTCTTTTTAAGCACTTTAATTCTCGTGTCAGAACCTCTGTTTCAG

Ace file of the UniGene sp_v1.1_unigene62270

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alcohol dehydrogenase (Fragment) n=1 Tax=Pinus banksiana RepID=Q43300_PINBN	-	-	3.0e-14	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	alcohol dehydrogenase	-	-	5.98158e-15	93%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ91

Fln msg: your sequence is shorter than subject: 57 - 103

Fln protein: RRDLGCHSFFGNYKPRSDLPGLVELYLDKKLELDKFITHEVSFANINEAFDYMING*

Protein Length: 58

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTTGGAAACTATAAACCCCGTTCCGATTTGCCAGGCCTTGTAGAATTGTATTTGGATAAAAAGCTTGAACTGGATAAATTTATTACACACGAGGTTTCATTTGCCAATATCAACGAGGCATTTGATTACATGATTAATGGCTAG___AGTCTGAGATGCGTGATAAACTTGACTGGTAATTAAACATTTGAGAGGAAGTCAATAGTTCACAATCCCATTATTGTGGAGACGTTTCACAATGTTCACAATACCATAAGAACTCTATCATGTCTTTCCTTACAAGCATCCGCATTCTCTATGGCCCTCGACAGGATTGTGGCCACCACTTCCATTAACTACTGAACCTTCGCTTTGTTTAAGAACCCAACGGTTTAGGTACGTGGAGTGCTTACGGGCCTTGCATTTCTGAGTGAAGTTTAATGCTGCAAATTGTTTTGCATTACAATGTAATAGTCTTTTTAAGCACTTTAATTCTCGTGTCAGAACCTCTGTTTCAG

Fln Alignment:

sp_v1.1_unigene62270___SFFGNYKPRSDLPGXXXXXXXXXXXXXXFITHEVSFANINEAFDYMING*SLRCVINLTGN
A9NQ91_______________TFFGNYKPRSDLPGLVELYLDKKLELEKFITHEVSFANINKAFDYMIKGESLRCVINVIGN

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
197	33	66			0.997453
300		66	33		0.997452
301	33			66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain