SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62194

Length: 448 nt

UniGene Fasta

>sp_v1.1_unigene62194
TGTCGTGACCTTGGCTGTCACTCAGGGATACGTCTGCCAATGGCAATGGCAATGCCGTTGCTGCCACGCCAAAGAGGAATGGGAATATTGCTGCCAATAGACGGAAACGGAATGGCTACAATCAGGTGAGACGGCGAACAAACTCCAGAATCAGCAGGGCACAGCGTGAAGAAAGCATCAGGAGAACTGTCTATGTCTCAGATATAGATCAGATGGTGACTGAAGAGCAACTTGCAGCTCTGTTTATAAATTGTGGACAGTTGCAGGTTGTTGATTGTCGTGTTTGTGGGGATCCAAATTCAGTTCTTCGCTTTGCTTTTGTAGAATTCACTGATGAGGAAAGTGCTAGAGCAGCTCTTAGCCTCTCTGGGACTATGCTTGGGTTTTATCCAGTTAGGGTCCTCCCCTCAAAAACAGCAATTCTTCCAGTTAACCCTACATTTCTCCC

Ace file of the UniGene sp_v1.1_unigene62194

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-binding protein, putative	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	84%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNG9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 99 aas, your sequence is shorter than subject: 148 - 288

Fln protein: S*PWLSLRDTSANGNGNAVAATPKRNGNIAANRRKRNGYNQVRRRTNSRISRAQREESIRRTVYVSDIDQMVTEEQLAALFINCGQLQVVDCRVCGDPNSVLRFAFVEFTDEESARAALSLSGTMLGFYPVRVLPSKTAILPVNPTFL

Protein Length: 149

Fln nts: TGTCGTGACCTTGGCTGTCACTCAGGGATACGTCTGCCAATGGCAATGGCAATGCCGTTGCTGCCACGCCAAAGAGGAATGGGAATATTGCTGCCAATAGACGGAAACGGAATGGCTACAATCAGGTGAGACGGCGAACAAACTCCAGAATCAGCAGGGCACAGCGTGAAGAAAGCATCAGGAGAACTGTCTATGTCTCAGATATAGATCAGATGGTGACTGAAGAGCAACTTGCAGCTCTGTTTATAAATTGTGGACAGTTGCAGGTTGTTGATTGTCGTGTTTGTGGGGATCCAAATTCAGTTCTTCGCTTTGCTTTTGTAGAATTCACTGATGAGGAAAGTGCTAGAGCAGCTCTTAGCCTCTCTGGGACTATGCTTGGGTTTTATCCAGTTAGGGTCCTCCCCTCAAAAACAGCAATTCTTCCAGTTAACCCTACATTTCTCCC

Fln Alignment:

sp_v1.1_unigene62194___NGNIAAN-RRKRNGYNQVRRRTNSRISRAQREESIRRTVYVSDIDQMVTEEQLAALFINCGQLQVVDCRVCGDPNSVLRFAFVEFTDEESARAALSLSGTMLGFYPVRVLPSKTAILPVNPTFL
A9NNG9_______________NGSFANNSRRKKNNFNQGKRRLNGRNIRAQQEDSVRRTVYVCDIDHQVTEEQLAALFINCGQ--VIDCRICGDPNSVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPTFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain