SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62186

Length: 360 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene62186
CGTCGTGACCTTGGCTGTCACTCAAATGGCAAGGCCACCAAAACTGCACGGTCACATGGAAGGAAGTTTCAGGTTTCCATAAAGCAAGAGACCACTCGCCTTCTGGGTAATTTGGGATGGGCGTTTATGCAACAGCATGACTACGTTTCGGCAGAAATCATTTACAGGAAAGCGCAGGAATTGGAGCCAGATGACAACAAGGTCTGTAATTTAAGCGTCTGTTTGATGAGGCAGGGGAAGGTGGATGAGGCCATGGGTATTCTACAGGGTCTGCTGAACAACAGTAAGAATTCGACGAACTATAATCATAATAACAGTAGAGGAAAATCGAATTCACTGGATCGTGTGGAAGCTTTGTTG

Ace file of the UniGene sp_v1.1_unigene62186

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	1.76984e-42	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tetratricopeptide TPR-1	IPR001440	-	1.76984e-42	84%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	1.76984e-42	84%
Blast2go	Tetratricopeptide repeat-containing domain	IPR013026	-	1.76984e-42	84%
Blast2go	Tetratricopeptide repeat	IPR019734	-	1.76984e-42	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P294

Fln msg: Distance to subject end: 69 aas, your sequence is shorter than subject: 120 - 248

Fln protein: RRDLGCHSNGKATKTARSHGRKFQVSIKQETTRLLGNLGWAFMQQHDYVSAEIIYRKAQELEPDDNKVCNLSVCLMRQGKVDEAMGILQGLLNNSKNSTNYNHNNSRGKSNSLDRVEALL

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGGCAAGGCCACCAAAACTGCACGGTCACATGGAAGGAAGTTTCAGGTTTCCATAAAGCAAGAGACCACTCGCCTTCTGGGTAATTTGGGATGGGCGTTTATGCAACAGCATGACTACGTTTCGGCAGAAATCATTTACAGGAAAGCGCAGGAATTGGAGCCAGATGACAACAAGGTCTGTAATTTAAGCGTCTGTTTGATGAGGCAGGGGAAGGTGGATGAGGCCATGGGTATTCTACAGGGTCTGCTGAACAACAGTAAGAATTCGACGAACTATAATCATAATAACAGTAGAGGAAAATCGAATTCACTGGATCGTGTGGAAGCTTTGTTG

Fln Alignment:

sp_v1.1_unigene62186___GCHSNGKATKTARSHGRKFQVSIKQETTRLLGNLGWAFMQQHDYVSAEIIYRKAQELEPDDNKVCNLSVCLMRQGKVDEAMGILQGLLXXXXXXXXXXXXXXRGKSNSLDRVEALL
A9P294_______________GAAFNGKSTKTARSHGRKFQVSIKKETTRLLGNLGLAFMQQHDYCYAEIVYRKAQVLEPDDNKVCNLSVCLMRQGKVEEAMGLLQGLLNNNKNSMNYKHNNSRGKSNSLDRVEALL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain