SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62157

Length: 483 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene62157
ACATCAGGCAACATGGCGATTACTGGAAGGGCGTTGTAGGGCTGGCTAAGGGCCTTCGTAAGGCCAATAGCGCCTACCCCCTCGTTGTTGCCATGTTGCCTGATGTTCCCGAGGAGCACAGAGAGATTTTGAGGCGCCAAGGATGTATATGTCGCGAGATCGAACCTATCTACCCTCCTGAAAATCAAGTGCAGTTCGCCATGGCTTACTATGTCATAAATTACTCTAAGCTACGTATGTGGGAGAAGTTTGAGGATTACAGCAAGATGGTGTACCTGGATGCAGACATCCAAGTCTTTGAGAACATCGACGAAACCAGCGCGCTTGAAGCATAGAGGACGGAAGTTTTCGAAGTGTTAAAAATTCGGAAATCTCGCGATGGAAAGAGCTCCAGGCTTATTCTGATTTCGACCAGAATGGATAGTTGAATTTCAGTTTTCTGCAGAATGGATTGAAGAATTTCTGATTTGACTAGATTGAATC

Ace file of the UniGene sp_v1.1_unigene62157

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Galactinol synthase n=1 Tax=Coffea arabica RepID=E0X627_COFAR	-	-	4.06377e-44	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	galactinol synthase 1	-	-	0.0	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	0.0	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 8	IPR002495	-	0.0	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQQ1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 151 aas, your sequence is shorter than subject: 111 - 341

Fln protein: IRQHGDYWKGVVGLAKGLRKANSAYPLVVAMLPDVPEEHREILRRQGCICREIEPIYPPENQVQFAMAYYVINYSKLRMWEKFEDYSKMVYLDADIQVFENIDETSALEA*

Protein Length: 112

Fln nts: ACATCAGGCAACATGGCGATTACTGGAAGGGCGTTGTAGGGCTGGCTAAGGGCCTTCGTAAGGCCAATAGCGCCTACCCCCTCGTTGTTGCCATGTTGCCTGATGTTCCCGAGGAGCACAGAGAGATTTTGAGGCGCCAAGGATGTATATGTCGCGAGATCGAACCTATCTACCCTCCTGAAAATCAAGTGCAGTTCGCCATGGCTTACTATGTCATAAATTACTCTAAGCTACGTATGTGGGAGAAGTTTGAGGATTACAGCAAGATGGTGTACCTGGATGCAGACATCCAAGTCTTTGAGAACATCGACGAAACCAGCGCGCTTGAAGCATAGAGGACGGAAGTTTTCGAAGTGTTAAAAATTCGGAAATCTCGCGATGGAAAGAGCTCCAGGCTTATTCTGATTTCGACCAGAATGGATAGTTGAATTTCAGTTTTCTGCAGAATGGATTGAAGAATTTCTGATTTGACTAGATTGAATC

Fln Alignment:

sp_v1.1_unigene62157___HGDYWKGVVGLAKGLRKANSAYPLVVAMLPDVPEEHREILRRQGCICREIEPIYPPENQVQFAMAYYVINYSKLRMWEKFEDYSKMVYLDADIQVFENID
B8LQQ1_______________NGDYWKGVVGLAKGLRKVNSAYPLVVAMLPDVPEEHREILRSQGCICREIVPIYPPENQVQFAMAYYVINYSKLRIWE-FEEYSKMVYLDADIQVFENID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain