SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62130

Length: 559 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene62130
AATGGGGGCTAGTTGTCTTCTGACAGCTGACCATCGTTTAAATTCTGGACTAGTGCAGACTGTAGAGGTGAAAGTTCGCATGGATTGTGAGGGCTGTGAGAGGAAAGTGAAAAATTCAGTCTCTTCCATGAAAGGAGTAAGATCTGTCACCGTGAATAGAAATCAGCAGAGGTTGACAGTAACTGGATACGTGGATGCTAACAAAGTACTGAAGAATGTGAAGGGCACAGGGAAACGCGCAGAGTTTTGGCCTTATGTGCCTTATAATCTGGTCTACTATCCCTACAGTTCTCAGGCCTAGACAAGAAGGCTCCTTCCGGCTATGTACGGAACGTGGAGACTGCATATCCAACCCCAAATCGCACAGACGAGAAATACACGACACTATTCAGCGACGACAATCCGAATGCCTGCACCATTATGTGGGGAAGGTGGACTGGGCTTGTCACCAACTCGAGAGGTCGAAAGATCAACTTCAAAGTTCGTCTGGAAATTGAAATGGGGAGGACCATGCTTCTAGAAAATGGTAGCAGCGTAATATCGATTCCTCACTTCGACT

Ace file of the UniGene sp_v1.1_unigene62130

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	metal ion binding protein, putative	-	-	6.0e-35	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	protein	-	-	3.30821e-38	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	3.30821e-38	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heavy metal-associated domain, HMA	IPR006121	-	3.30821e-38	85%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD09

Fln msg: Separated hits, possible frame ERROR between 250 and 301, STOP codon was not found. Distance to subject end: 45 aas, atg_distance in limit (1-15): atg_distance = 5, your sequence is longer than subject: 186 - 146

Fln protein: MGASCLLTADHRLNSGLVQTVEVKVRMDCEGCERKVKNSVSSMKGVRSVTVNRNQQRLTVTGYVDANKVLKNVKGTGKRAEFxxxxxxxxxxxxxxxxxxDKKAPSGYVRNVETAYPTPNRTDEKYTTLFSDDNPNACTIMWGRWTGLVTNSRGRKINFKVRLEIEMGRTMLLENGSSVISIPHFD

Protein Length: 187

Fln nts: A_-_ATGGGGGCTAGTTGTCTTCTGACAGCTGACCATCGTTTAAATTCTGGACTAGTGCAGACTGTAGAGGTGAAAGTTCGCATGGATTGTGAGGGCTGTGAGAGGAAAGTGAAAAATTCAGTCTCTTCCATGAAAGGAGTAAGATCTGTCACCGTGAATAGAAATCAGCAGAGGTTGACAGTAACTGGATACGTGGATGCTAACAAAGTACTGAAGAATGTGAAGGGCACAGGGAAACGCGCAGAGTTTTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGACAAGAAGGCTCCTTCCGGCTATGTACGGAACGTGGAGACTGCATATCCAACCCCAAATCGCACAGACGAGAAATACACGACACTATTCAGCGACGACAATCCGAATGCCTGCACCATTATGTGGGGAAGGTGGACTGGGCTTGTCACCAACTCGAGAGGTCGAAAGATCAACTTCAAAGTTCGTCTGGAAATTGAAATGGGGAGGACCATGCTTCTAGAAAATGGTAGCAGCGTAATATCGATTCCTCACTTCGACT

Fln Alignment:

sp_v1.1_unigene62130___QTVEVKVRMDCEGCERKVKNSVSSMKGVRSVTVNRNQQRLTVTGYVDANKVLKNVKGTGKRAEFWxxxxxxxxxxxxxxxxxDKKAPSGYVRNVETAYPTP-NRTDEKYTTLFSDDNPNACTIM
D5AD09_______________QTVEMKVRMDCEGCERKVKKSVSSMKGVESVDVNRKEQKLTVTGYVDVNKVVKKVKGTGKRAELWxxxxxxxxxxxxxxxxxDKKAPSGYVRNVESSFLSPPNRTDERYTTLFSEDNANSCTIM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain